Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0357.Seq
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.1  
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                25   6.2  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   7.2  
SB_24040| Best HMM Match : Extensin_2 (HMM E-Value=0.009)              28   9.5  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          28   9.5  

>SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +2

Query: 476 PPTAPVAAALYQPPLATLEATEETYPLRLEEPVYGLMFSG--RSSYLLGG 619
           PP  P A   YQ PL T +     YP   + P YG    G     Y+ GG
Sbjct: 142 PPPMPCAQGPYQAPLGTYQGPAPPYP---QLPGYGPPLQGDYPGGYVAGG 188


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 25.4 bits (53), Expect(2) = 6.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 765 NPHPHGNVKRNP 730
           NPHPHGN +  P
Sbjct: 474 NPHPHGNPRPKP 485



 Score = 21.4 bits (43), Expect(2) = 6.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 768 SNPHPHGN 745
           SNPH HGN
Sbjct: 467 SNPHHHGN 474


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 275 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 427
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


>SB_24040| Best HMM Match : Extensin_2 (HMM E-Value=0.009)
          Length = 530

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 1/126 (0%)
 Frame = +2

Query: 347 IISAGREGEAIPFISWS-DPEPFPVYYVGVCTGWGATGSWKIEVPPTAPVAAALYQPPLA 523
           IIS G     IP IS     EP P+  +GV +      S  +  PP   ++  L   P+ 
Sbjct: 22  IISMGVTSPPIPTISMGVTSEPIPIISIGVTSASIPIISMGVTSPPIPIISMGLTNAPIP 81

Query: 524 TLEATEETYPLRLEEPVYGLMFSGRSSYLLGGRCGEGQDCSGEPL*CGSCCSRKVPTIPL 703
            +     + P+    P+  +  +  +  ++      G   +  P+      S  +PTI +
Sbjct: 82  IISMGVTSAPI----PIISMGVTSATIPII----SLGVTSAPIPIISMGVTSASIPTISM 133

Query: 704 G*NSFP 721
           G  S P
Sbjct: 134 GVTSAP 139


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 267 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYLG 395
           P  ++ K P  L +G I+  GF+G ++AL      ++LF    G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,246,478
Number of Sequences: 59808
Number of extensions: 542772
Number of successful extensions: 1468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)