Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0357.Seq
(768 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58250.1 68418.m07293 expressed protein 31 0.85
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family... 29 4.5
At4g14840.1 68417.m02281 expressed protein 28 6.0
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 28 6.0
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 28 6.0
At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,... 28 7.9
At5g13540.1 68418.m01563 expressed protein HERC2 - Homo sapiens,... 28 7.9
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 28 7.9
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 28 7.9
>At5g58250.1 68418.m07293 expressed protein
Length = 211
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 443 WGATGSWKIEVPPTAPVAAALYQPPLATLEATEETYPLRLEEPVYGLMFSGRSS 604
W TG+ + VPPTA AA +P L + ++T L L P L S SS
Sbjct: 2 WSVTGALTVAVPPTA--AACRTKPFLISSSFPKQTKKLHLSSPSLSLPSSHFSS 53
>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 300
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 414 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPG 289
G G S++D+N P P + P +TQ+ Y P + PG
Sbjct: 16 GPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPG 55
>At4g14840.1 68417.m02281 expressed protein
Length = 555
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 312 NIVVFGFVGIAALS--PLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAP 461
+I V G+ A+S P+D + F SYL + NL Q SE+ Q P
Sbjct: 294 HIYVSSMNGVIAVSHPPVDINPEEFDSYLNSLENLLQQQPSEAGQESSSSLP 345
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +2
Query: 311 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 445
E++ +W+ G+IS G+ PF W DP+P V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +2
Query: 311 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 445
E++ +W+ G+IS G+ PF W DP+P V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147
>At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,
EMBL:AF071172; isoform contains non-consensus GG
acceptor splice site at intron 6
Length = 788
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 556 EGVRFLRSLQGSQGGLVQCSCYRCSRWHFDFPGACGTPACADSDVVNWERFGIRPRYEWN 377
E + + S+Q + G L C+R RW + PA V++++ PR+ W
Sbjct: 431 ESIAVVHSIQET-GYLELACCFRKGRWSTHYTDLEKIPALKVGQFVHFQKGITEPRWGWR 489
Query: 376 SFTLASSG 353
+ S G
Sbjct: 490 AAKPDSRG 497
>At5g13540.1 68418.m01563 expressed protein HERC2 - Homo sapiens,
EMBL:AF071172; isoform contains non-consensus GG
acceptor splice site at intron 6
Length = 558
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 556 EGVRFLRSLQGSQGGLVQCSCYRCSRWHFDFPGACGTPACADSDVVNWERFGIRPRYEWN 377
E + + S+Q + G L C+R RW + PA V++++ PR+ W
Sbjct: 435 ESIAVVHSIQET-GYLELACCFRKGRWSTHYTDLEKIPALKVGQFVHFQKGITEPRWGWR 493
Query: 376 SFTLASSG 353
+ S G
Sbjct: 494 AAKPDSRG 501
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 360 PAEIMPLSQRTQKPRYSPPLRIP 292
P E+ P ++ P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 482 TAPVAAALYQPPLATLEATEETYPLRLEEP 571
TAP P T AT+ET P R EEP
Sbjct: 43 TAPTITKETAPTKETAPATKETAPTRTEEP 72
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,199,272
Number of Sequences: 28952
Number of extensions: 396389
Number of successful extensions: 1191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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