Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0356.Seq
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    25   2.2  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   2.9  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   3.8  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   8.8  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    23   8.8  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    23   8.8  

>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 272 VLNWINKPRFEILKKKKK 325
           VLN   +P++EILK KKK
Sbjct: 18  VLNTPIRPKYEILKSKKK 35


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 208 CKSIGYTNKRLRIIKNYNSSTCIKL 282
           CK IGY +K  R   +YN S  + L
Sbjct: 220 CKVIGYFSKEKRSASDYNVSCILTL 244


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 156 KTECLCTFSLVIHLISFTYASS 91
           K+    TFS +IHL SF Y +S
Sbjct: 33  KSSAPSTFSKLIHLTSFLYPNS 54


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 321 FFFFKISNLGLFIQFNTCTRII 256
           FFF   S   +F+ F+ CT +I
Sbjct: 2   FFFLVFSACEVFVGFSLCTLVI 23


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 254 IIILVHVLNWINKPR 298
           I+ LV+V +WIN PR
Sbjct: 146 ILALVYVPSWINLPR 160


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 56  RPVPTAEQLDAELDAY 103
           RP  +AE+LD E+D Y
Sbjct: 177 RPKKSAEELDKEMDDY 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,017
Number of Sequences: 5004
Number of extensions: 14631
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)