Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0356.Seq
         (328 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_20599| Best HMM Match : UPF0172 (HMM E-Value=7.2)                   26   8.3  

>SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 223 YTNKRLRIIKNYNSST 270
           YT K LR++K YNSS+
Sbjct: 684 YTFKNLRVVKEYNSSS 699


>SB_20599| Best HMM Match : UPF0172 (HMM E-Value=7.2)
          Length = 480

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 190 SMF*INCKSIGYTNKRLRI-IKNYNSSTCIKLD 285
           S F  NC   G+ N+R+RI I+  N + C   D
Sbjct: 411 SSFQDNCNLEGFNNRRVRIGIRGNNENECASPD 443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,717,743
Number of Sequences: 59808
Number of extensions: 91620
Number of successful extensions: 145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)