Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0356.Seq
         (328 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF172637-1|AAD46930.1|  266|Drosophila melanogaster LD24793p pro...    33   0.084
AE014297-550|AAF54070.1|  266|Drosophila melanogaster CG1101-PA ...    33   0.084
U31351-1|AAB97618.1|  810|Drosophila melanogaster protein ( Dros...    28   3.2  
AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adapti...    28   3.2  

>AF172637-1|AAD46930.1|  266|Drosophila melanogaster LD24793p
           protein.
          Length = 266

 Score = 33.1 bits (72), Expect = 0.084
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +2

Query: 53  KRPVPTAEQLDAELDAYVKEIK 118
           ++  PTAE+LDAELD+Y+ ++K
Sbjct: 244 RKAPPTAEELDAELDSYINDMK 265


>AE014297-550|AAF54070.1|  266|Drosophila melanogaster CG1101-PA
           protein.
          Length = 266

 Score = 33.1 bits (72), Expect = 0.084
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +2

Query: 53  KRPVPTAEQLDAELDAYVKEIK 118
           ++  PTAE+LDAELD+Y+ ++K
Sbjct: 244 RKAPPTAEELDAELDSYINDMK 265


>U31351-1|AAB97618.1|  810|Drosophila melanogaster protein (
           Drosophila melanogastergarnet mRNA, complete cds. ).
          Length = 810

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 185 CSQCSRLIVKV*VILIKDYEL*RIIILVHVLNWINKPRFEILKKKKKK 328
           C  C  L     +++++   L R ++L+HV  +      +I KKKK+K
Sbjct: 131 CCHCQLLFA---IVVVQCLSLYRCLLLIHVPTFFFLKLIQITKKKKQK 175


>AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adaptin
           subunit of AP-3 protein.
          Length = 810

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 185 CSQCSRLIVKV*VILIKDYEL*RIIILVHVLNWINKPRFEILKKKKKK 328
           C  C  L     +++++   L R ++L+HV  +      +I KKKK+K
Sbjct: 131 CCHCQLLFA---IVVVQCLSLYRCLLLIHVPTFFFLKLIQITKKKKQK 175


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,750,744
Number of Sequences: 53049
Number of extensions: 140548
Number of successful extensions: 244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 693319869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)