Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0356.Seq
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82266-4|CAB05180.1|  227|Caenorhabditis elegans Hypothetical pr...    31   0.20 
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (...    26   5.6  
Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical pr...    26   7.4  
AL117195-18|CAB55029.1|  490|Caenorhabditis elegans Hypothetical...    26   7.4  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z82266-4|CAB05180.1|  227|Caenorhabditis elegans Hypothetical
           protein F23B2.6 protein.
          Length = 227

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +2

Query: 53  KRPVPTAEQLDAELDAYV 106
           ++P  TAEQLDAELDAY+
Sbjct: 206 QKPPKTAEQLDAELDAYM 223


>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 5
           protein.
          Length = 1434

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 327 FFFFFFKISNLGLFIQFNTCTRIIILYN 244
           F FF F   N G+F+QF+  T  + +++
Sbjct: 458 FHFFPFSCPNHGVFLQFSVTTTSLAIFS 485


>Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical
           protein C01F6.5 protein.
          Length = 223

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 56  RPVPTAEQLDAELDAYVKE 112
           +P  T E+LDAELD Y+ +
Sbjct: 204 QPKKTLEELDAELDVYMSK 222


>AL117195-18|CAB55029.1|  490|Caenorhabditis elegans Hypothetical
           protein Y57A10A.25 protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 59  PVPTAEQLDAELDAYVK 109
           PVP +EQ+DA L+A V+
Sbjct: 445 PVPQSEQIDAHLEAMVE 461


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
            W05B2.4 protein.
          Length = 2265

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 182  LCSQCSRLIVKV*VILIKDYEL*RIIILVHVLNWINK 292
            L   C++  +K+   ++KD  + R++ L H+  WI K
Sbjct: 919  LLRTCAKYFIKIERNVLKDETIYRVMQLPHLPCWIQK 955


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,296,480
Number of Sequences: 27780
Number of extensions: 79882
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)