Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0356.Seq
         (328 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.8  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    20   8.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   8.8  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = +1

Query: 4  WSTWGKQKRTWWCRQRQTTST 66
          W     +++ WW R R+   T
Sbjct: 35 WVVNNIKRKRWWSRPREPAQT 55


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 263 LVHVLNWINKPRFEI 307
           LV V++W+ +P F I
Sbjct: 161 LVRVVSWLQEPSFYI 175


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 263 LVHVLNWINKPRFEI 307
           LV V++W+ +P F I
Sbjct: 161 LVRVVSWLQEPSFYI 175


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 145 SMHILISYSLDFFHI 101
           S+ ILISY+L  F+I
Sbjct: 23  SLIILISYALILFNI 37


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 311 LKFQIWVYLSNLIHVLEL 258
           LK+  W  +SNLI+  ++
Sbjct: 270 LKYNTWEPISNLINCSDI 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,466
Number of Sequences: 438
Number of extensions: 962
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)