Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0356.Seq
         (328 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19780.1 68415.m02311 leucine-rich repeat family protein / ex...    27   3.9  

>At2g19780.1 68415.m02311 leucine-rich repeat family protein /
           extensin family protein contains leucine rich-repeat
           (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar
           to leucine-rich repeat/extensin 1 (GI:13809918)
           [Arabidopsis thaliana]; contains similarity to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 402

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 159 DKTECLCTFSLVIHL-ISFTYASSSASNCSAVGTG 58
           D  + +CT   +I+L +SF + S  +S CS++  G
Sbjct: 315 DLPDLVCTLRNLINLTVSFNFFSGFSSQCSSLSVG 349


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,821,357
Number of Sequences: 28952
Number of extensions: 68015
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)