Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0355.Seq
(752 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit ... 160 3e-38
UniRef50_Q4SF83 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 159 5e-38
UniRef50_Q9AXN0 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 132 9e-30
UniRef50_A7AWJ0 Cluster: DNA-directed RNA polymerase II largest ... 126 8e-28
UniRef50_A5DCV3 Cluster: DNA-directed RNA polymerase II subunit ... 125 1e-27
UniRef50_Q5CUJ2 Cluster: DNA-directed RNA polymerase; n=3; Eukar... 124 2e-27
UniRef50_A5K7P4 Cluster: DNA-directed RNA polymerase; n=13; Euka... 124 2e-27
UniRef50_P14248 Cluster: DNA-directed RNA polymerase II subunit ... 124 2e-27
UniRef50_A3BPR9 Cluster: DNA-directed RNA polymerase; n=7; Magno... 123 5e-27
UniRef50_P04050 Cluster: DNA-directed RNA polymerase II subunit ... 121 2e-26
UniRef50_Q010D7 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 119 7e-26
UniRef50_Q8MX30 Cluster: DNA-directed RNA polymerase; n=1; Naegl... 117 3e-25
UniRef50_Q4N0F9 Cluster: DNA-directed RNA polymerase II largest ... 112 8e-24
UniRef50_Q84KP6 Cluster: DNA-directed RNA polymerase; n=3; Eukar... 111 2e-23
UniRef50_Q9BMP2 Cluster: DNA-directed RNA polymerase; n=2; Stylo... 108 1e-22
UniRef50_Q9AVW8 Cluster: DNA-directed RNA polymerase II largest ... 107 4e-22
UniRef50_O77165 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 99 1e-19
UniRef50_P17545 Cluster: DNA-directed RNA polymerase II subunit ... 98 2e-19
UniRef50_Q27095 Cluster: DNA-directed RNA polymerase; n=2; Trich... 95 2e-18
UniRef50_P29158 Cluster: DNA-directed RNA polymerase subunit A''... 94 4e-18
UniRef50_Q9YAU2 Cluster: DNA-directed RNA polymerase subunit A''... 94 4e-18
UniRef50_UPI00006CF1E9 Cluster: RNA polymerase Rpb1, domain 2 fa... 93 7e-18
UniRef50_Q6IUR3 Cluster: DNA-directed RNA polymerase; n=3; Entam... 93 7e-18
UniRef50_Q01DV6 Cluster: DNA-directed RNA polymerase; n=15; Euka... 93 9e-18
UniRef50_O28390 Cluster: DNA-directed RNA polymerase subunit A''... 93 9e-18
UniRef50_A7AP17 Cluster: RNA polymerase Rpb1, domain containing ... 92 1e-17
UniRef50_UPI000049A544 Cluster: DNA-directed RNA polymerase III ... 92 2e-17
UniRef50_Q8SSC4 Cluster: DNA-directed RNA polymerase II subunit ... 91 2e-17
UniRef50_Q54ZZ2 Cluster: DNA-directed RNA polymerase; n=2; Dicty... 91 3e-17
UniRef50_Q8TCW3 Cluster: DNA-directed RNA polymerase; n=17; Meta... 91 3e-17
UniRef50_Q71ET7 Cluster: DNA-directed RNA polymerase; n=689; Euk... 90 5e-17
UniRef50_Q6JTX4 Cluster: RNA polymerase II largest subunit; n=6;... 89 8e-17
UniRef50_A1RWW4 Cluster: DNA-directed RNA polymerase, subunit A'... 89 8e-17
UniRef50_O14802 Cluster: DNA-directed RNA polymerase III subunit... 89 8e-17
UniRef50_O96452 Cluster: DNA-directed RNA polymerase; n=1; Anton... 89 1e-16
UniRef50_Q03586 Cluster: DNA-directed RNA polymerase subunit A''... 89 1e-16
UniRef50_Q9VXP9 Cluster: DNA-directed RNA polymerase; n=4; Dipte... 89 1e-16
UniRef50_P04051 Cluster: DNA-directed RNA polymerase III subunit... 87 3e-16
UniRef50_Q3LWE3 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 87 4e-16
UniRef50_Q3SE61 Cluster: DNA-directed RNA polymerase; n=2; Param... 87 4e-16
UniRef50_A5H289 Cluster: DNA-directed RNA polymerase; n=39; Fung... 85 2e-15
UniRef50_A5K7T9 Cluster: DNA-directed RNA polymerase; n=1; Plasm... 84 3e-15
UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit... 84 3e-15
UniRef50_O17628 Cluster: DNA-directed RNA polymerase; n=3; Caeno... 84 4e-15
UniRef50_A6SCV1 Cluster: DNA-directed RNA polymerase; n=19; Fung... 84 4e-15
UniRef50_P15354 Cluster: DNA-directed RNA polymerase subunit A''... 84 4e-15
UniRef50_O94666 Cluster: DNA-directed RNA polymerase III subunit... 84 4e-15
UniRef50_Q4U940 Cluster: DNA-directed RNA polymerase III largest... 83 7e-15
UniRef50_Q74MX8 Cluster: NEQ427; n=1; Nanoarchaeum equitans|Rep:... 83 9e-15
UniRef50_O27126 Cluster: DNA-directed RNA polymerase subunit A''... 83 9e-15
UniRef50_Q9LVH0 Cluster: DNA-directed RNA polymerase; n=11; Euph... 82 1e-14
UniRef50_Q7YYV9 Cluster: DNA-directed RNA polymerase; n=3; Crypt... 82 1e-14
UniRef50_A2DEX5 Cluster: DNA-directed RNA polymerase; n=1; Trich... 82 1e-14
UniRef50_P15398 Cluster: DNA-directed RNA polymerase I subunit R... 82 2e-14
UniRef50_Q7RQQ6 Cluster: DNA-directed RNA polymerase; n=9; Plasm... 81 2e-14
UniRef50_Q8SS15 Cluster: DNA-directed RNA polymerase; n=1; Encep... 81 3e-14
UniRef50_A7J5B4 Cluster: RNA polymerase II largest subunit; n=61... 81 3e-14
UniRef50_P91875 Cluster: DNA-directed RNA polymerase I subunit R... 81 3e-14
UniRef50_Q8SRM3 Cluster: DNA-directed RNA polymerase; n=1; Encep... 79 9e-14
UniRef50_P08968 Cluster: DNA-directed RNA polymerase III subunit... 79 1e-13
UniRef50_UPI0000E46841 Cluster: PREDICTED: similar to RNA polyme... 79 2e-13
UniRef50_UPI0000D56583 Cluster: PREDICTED: similar to CG10122-PA... 79 2e-13
UniRef50_UPI00004998AA Cluster: DNA-directed RNA polymerase I la... 79 2e-13
UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes... 79 2e-13
UniRef50_Q7RXJ6 Cluster: DNA-directed RNA polymerase; n=4; root|... 78 2e-13
UniRef50_UPI00015B5184 Cluster: PREDICTED: similar to DNA-direct... 78 3e-13
UniRef50_UPI0000DB7146 Cluster: PREDICTED: similar to RNA polyme... 78 3e-13
UniRef50_UPI0000ECC670 Cluster: DNA-directed RNA polymerase I la... 78 3e-13
UniRef50_A7S9W9 Cluster: Predicted protein; n=1; Nematostella ve... 77 4e-13
UniRef50_A0DJB3 Cluster: DNA-directed RNA polymerase; n=2; Oligo... 77 4e-13
UniRef50_A4RCX8 Cluster: DNA-directed RNA polymerase; n=3; Sorda... 77 4e-13
UniRef50_Q8PUR2 Cluster: DNA-directed RNA polymerase subunit A''... 77 4e-13
UniRef50_A7PWB4 Cluster: Chromosome chr8 scaffold_34, whole geno... 77 5e-13
UniRef50_Q3SE62 Cluster: DNA-directed RNA polymerase; n=3; Param... 77 5e-13
UniRef50_Q6E6G2 Cluster: DNA-directed RNA polymerase; n=1; Anton... 77 6e-13
UniRef50_Q9SVY0 Cluster: DNA-directed RNA polymerase I 190K chai... 76 8e-13
UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 76 8e-13
UniRef50_Q7RWI3 Cluster: DNA-directed RNA polymerase; n=4; Peziz... 76 8e-13
UniRef50_Q0PQ09 Cluster: DNA-directed RNA polymerase; n=8; Peziz... 76 8e-13
UniRef50_A6SJ73 Cluster: DNA-directed RNA polymerase; n=2; Scler... 76 8e-13
UniRef50_A1CP71 Cluster: DNA-directed RNA polymerase; n=8; Eurot... 76 8e-13
UniRef50_O95602 Cluster: DNA-directed RNA polymerase I subunit R... 76 8e-13
UniRef50_Q22M85 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 75 1e-12
UniRef50_A3FQH3 Cluster: DNA-directed RNA polymerase; n=2; Crypt... 75 1e-12
UniRef50_Q5TMU2 Cluster: DNA-directed RNA polymerase; n=1; Anoph... 74 3e-12
UniRef50_UPI0000F1FC15 Cluster: PREDICTED: similar to polymerase... 74 4e-12
UniRef50_Q4PB85 Cluster: DNA-directed RNA polymerase; n=1; Ustil... 74 4e-12
UniRef50_Q4UI00 Cluster: DNA-directed RNA polymerase; n=2; Theil... 73 6e-12
UniRef50_A2GJD3 Cluster: DNA-directed RNA polymerase; n=3; Trich... 73 6e-12
UniRef50_Q0V3B7 Cluster: DNA-directed RNA polymerase; n=2; Ascom... 73 6e-12
UniRef50_A6R8S3 Cluster: DNA-directed RNA polymerase; n=1; Ajell... 73 6e-12
UniRef50_P10964 Cluster: DNA-directed RNA polymerase I subunit R... 73 6e-12
UniRef50_Q8LLJ6 Cluster: DNA-directed RNA polymerase; n=1; Ochro... 73 8e-12
UniRef50_A5KB21 Cluster: DNA-directed RNA polymerase; n=1; Plasm... 73 8e-12
UniRef50_Q4A369 Cluster: DNA-directed RNA polymerase; n=1; Emili... 73 1e-11
UniRef50_Q23DD6 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 73 1e-11
UniRef50_Q5KIF6 Cluster: DNA-directed RNA polymerase; n=1; Filob... 73 1e-11
UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasm... 72 1e-11
UniRef50_Q98RN1 Cluster: DNA-directed RNA polymerase; n=1; Guill... 71 2e-11
UniRef50_A5BD07 Cluster: DNA-directed RNA polymerase; n=1; Vitis... 71 3e-11
UniRef50_A7ARZ5 Cluster: DNA directed RNA polymerase; n=1; Babes... 71 3e-11
UniRef50_Q6C1S4 Cluster: DNA-directed RNA polymerase; n=1; Yarro... 71 3e-11
UniRef50_P25202 Cluster: DNA-directed RNA polymerase III subunit... 71 4e-11
UniRef50_Q553A1 Cluster: DNA-directed RNA polymerase; n=2; Dicty... 70 5e-11
UniRef50_Q7RJK4 Cluster: DNA-directed RNA polymerase; n=13; Euka... 70 7e-11
UniRef50_Q69X40 Cluster: DNA-directed RNA polymerase; n=6; Oryza... 69 9e-11
UniRef50_Q7R0K2 Cluster: DNA-directed RNA polymerase; n=1; Giard... 68 3e-10
UniRef50_Q8ZYQ7 Cluster: DNA-directed RNA polymerase subunit A''... 67 5e-10
UniRef50_Q8TXI9 Cluster: DNA-directed RNA polymerase largest sub... 65 2e-09
UniRef50_Q890N5 Cluster: DNA-directed RNA polymerase subunit bet... 65 2e-09
UniRef50_Q7T6X5 Cluster: DNA-directed RNA polymerase subunit 1; ... 64 4e-09
UniRef50_P16355 Cluster: DNA-directed RNA polymerase I subunit R... 63 6e-09
UniRef50_Q58446 Cluster: DNA-directed RNA polymerase subunit A''... 63 8e-09
UniRef50_A5Z8Z4 Cluster: DNA-directed RNA polymerase; n=2; Bacte... 62 2e-08
UniRef50_A4M8H7 Cluster: DNA-directed RNA polymerase; n=1; Petro... 62 2e-08
UniRef50_Q18EX7 Cluster: DNA-directed RNA polymerase subunit A''... 62 2e-08
UniRef50_Q6YQW2 Cluster: DNA-directed RNA polymerase subunit bet... 62 2e-08
UniRef50_Q4D133 Cluster: DNA-directed RNA polymerase; n=7; Trypa... 61 2e-08
UniRef50_Q4QEN2 Cluster: DNA-directed RNA polymerase I largest s... 61 3e-08
UniRef50_Q8MUU2 Cluster: DNA-directed RNA polymerase; n=4; Giard... 60 8e-08
UniRef50_Q8R7U7 Cluster: DNA-directed RNA polymerase subunit bet... 60 8e-08
UniRef50_Q2RFP0 Cluster: DNA-directed RNA polymerase subunit bet... 60 8e-08
UniRef50_Q3ZX00 Cluster: DNA-directed RNA polymerase subunit bet... 59 1e-07
UniRef50_A7HNY1 Cluster: DNA-directed RNA polymerase, beta' subu... 59 1e-07
UniRef50_A5USR6 Cluster: DNA-directed RNA polymerase; n=4; Chlor... 58 2e-07
UniRef50_Q97NQ8 Cluster: DNA-directed RNA polymerase subunit bet... 58 2e-07
UniRef50_Q9RVW0 Cluster: DNA-directed RNA polymerase subunit bet... 58 2e-07
UniRef50_Q82DQ4 Cluster: DNA-directed RNA polymerase subunit bet... 57 4e-07
UniRef50_P95405 Cluster: DNA-directed RNA polymerase subunit bet... 57 4e-07
UniRef50_Q6F0L8 Cluster: DNA-directed RNA polymerase subunit bet... 57 4e-07
UniRef50_Q91FI1 Cluster: 343L; n=1; Invertebrate iridescent viru... 57 5e-07
UniRef50_Q9AW39 Cluster: DNA-directed RNA polymerase; n=1; Guill... 57 5e-07
UniRef50_Q0LJX1 Cluster: DNA-directed RNA polymerase, subunit be... 56 9e-07
UniRef50_Q9PQV5 Cluster: DNA-directed RNA polymerase subunit bet... 54 5e-06
UniRef50_Q196X0 Cluster: DNA-directed RNA polymerase; n=1; Aedes... 53 7e-06
UniRef50_Q4A5S8 Cluster: DNA-directed RNA polymerase subunit bet... 53 7e-06
UniRef50_P47582 Cluster: DNA-directed RNA polymerase subunit bet... 53 7e-06
UniRef50_Q3LWH2 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 52 2e-05
UniRef50_Q8G515 Cluster: DNA-directed RNA polymerase subunit bet... 52 2e-05
UniRef50_Q98Q24 Cluster: DNA-directed RNA polymerase subunit bet... 50 6e-05
UniRef50_Q3LWD4 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 48 3e-04
UniRef50_Q2N0X2 Cluster: RNA polymerase III large subunit; n=1; ... 47 6e-04
UniRef50_Q73JJ8 Cluster: DNA-directed RNA polymerase subunit bet... 47 6e-04
UniRef50_Q06J19 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 46 8e-04
UniRef50_A4E9H2 Cluster: DNA-directed RNA polymerase; n=1; Colli... 46 0.001
UniRef50_Q7MX26 Cluster: DNA-directed RNA polymerase subunit bet... 46 0.001
UniRef50_Q7VJ82 Cluster: Bifunctional DNA-directed RNA polymeras... 46 0.001
UniRef50_Q3ZJ90 Cluster: DNA-directed RNA polymerase subunit bet... 45 0.002
UniRef50_Q7VA30 Cluster: DNA-directed RNA polymerase subunit bet... 45 0.002
UniRef50_Q19VA0 Cluster: DNA-directed RNA polymerase; n=1; Chlor... 45 0.002
UniRef50_A6YGE2 Cluster: DNA-directed RNA polymerase; n=1; Lepto... 45 0.002
UniRef50_Q7PCJ6 Cluster: DNA-directed RNA polymerase subunit bet... 45 0.002
UniRef50_Q8KTP7 Cluster: DNA-directed RNA polymerase; n=1; Candi... 44 0.003
UniRef50_Q9Z999 Cluster: DNA-directed RNA polymerase subunit bet... 44 0.003
UniRef50_Q39KH4 Cluster: DNA-directed RNA polymerase subunit bet... 44 0.003
UniRef50_Q9TL04 Cluster: DNA-directed RNA polymerase subunit bet... 44 0.003
UniRef50_Q9MUS7 Cluster: DNA-directed RNA polymerase subunit bet... 44 0.003
UniRef50_Q4G3A5 Cluster: DNA-directed RNA polymerase subunit bet... 44 0.003
UniRef50_Q20EX3 Cluster: DNA-directed RNA polymerase; n=1; Oltma... 44 0.004
UniRef50_Q0P3M4 Cluster: DNA-directed RNA polymerase; n=1; Ostre... 44 0.004
UniRef50_Q7VRP8 Cluster: DNA-directed RNA polymerase subunit bet... 44 0.004
UniRef50_Q83066 Cluster: DNA-directed RNA polymerase; n=3; Lymph... 44 0.005
UniRef50_Q06VH1 Cluster: RNA polymerase II; n=1; Trichoplusia ni... 44 0.005
UniRef50_Q1KVX8 Cluster: DNA-directed RNA polymerase; n=1; Scene... 44 0.005
UniRef50_Q9CK92 Cluster: DNA-directed RNA polymerase subunit bet... 44 0.005
UniRef50_Q7VKL8 Cluster: DNA-directed RNA polymerase subunit bet... 44 0.005
UniRef50_P23581 Cluster: DNA-directed RNA polymerase subunit bet... 44 0.005
UniRef50_Q9AIH0 Cluster: DNA-directed RNA polymerase; n=17; Cand... 43 0.007
UniRef50_A3ZLH7 Cluster: DNA-directed RNA polymerase; n=2; Planc... 43 0.007
UniRef50_Q5FTX8 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.007
UniRef50_Q1ACN4 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.007
UniRef50_A6DPM8 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.009
UniRef50_Q2W2I2 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.009
UniRef50_P49468 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.009
UniRef50_P48120 Cluster: DNA-directed RNA polymerase subunit bet... 43 0.009
UniRef50_Q2EEX0 Cluster: DNA-directed RNA polymerase; n=1; Helic... 42 0.012
UniRef50_P36252 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.012
UniRef50_Q8RHI7 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.012
UniRef50_P22705 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.012
UniRef50_Q110H3 Cluster: DNA-directed RNA polymerase, beta'' sub... 42 0.016
UniRef50_A6PR79 Cluster: DNA-directed RNA polymerase, beta' subu... 42 0.016
UniRef50_Q06SF2 Cluster: DNA-directed RNA polymerase; n=1; Stige... 42 0.016
UniRef50_Q8KG14 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.016
UniRef50_O67763 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.016
UniRef50_A0T0Q9 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.016
UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.016
UniRef50_Q6B8R6 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.016
UniRef50_Q9TM34 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.016
UniRef50_P12465 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.016
UniRef50_A7QYV9 Cluster: Chromosome chr6 scaffold_256, whole gen... 42 0.022
UniRef50_Q2LQ86 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.022
UniRef50_Q32RG2 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.022
UniRef50_Q8WI26 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.022
UniRef50_P41606 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.022
UniRef50_P60290 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.022
UniRef50_P06274 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.022
UniRef50_Q8MA10 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.022
UniRef50_Q85C71 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.022
UniRef50_Q85FM9 Cluster: DNA-directed RNA polymerase subunit bet... 42 0.022
UniRef50_Q0E534 Cluster: 52.2 kDa DNA-directed RNA polymerase II... 41 0.029
UniRef50_Q5SCY0 Cluster: DNA-directed RNA polymerase; n=2; Embry... 41 0.029
UniRef50_A7P7C3 Cluster: Chromosome chr9 scaffold_7, whole genom... 41 0.029
UniRef50_P16025 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.029
UniRef50_P56764 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.029
UniRef50_P60289 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.029
UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria tenella... 41 0.038
UniRef50_Q32RY2 Cluster: DNA-directed RNA polymerase subunit bet... 41 0.038
UniRef50_A0T0D9 Cluster: DNA-directed RNA polymerase subunit bet... 40 0.050
UniRef50_O21238 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 40 0.066
UniRef50_Q1L5Y5 Cluster: DNA-directed RNA polymerase; n=4; Chara... 39 0.15
UniRef50_Q4MY81 Cluster: DNA-directed RNA polymerase beta'' chai... 39 0.15
UniRef50_Q1NYR2 Cluster: DNA-directed RNA polymerase beta' chain... 38 0.20
UniRef50_Q6YHB9 Cluster: DNA-directed RNA polymerase; n=5; Ranav... 38 0.35
UniRef50_A6NYC6 Cluster: DNA-directed RNA polymerase; n=1; Bacte... 38 0.35
UniRef50_Q2WGI5 Cluster: RNA polymerase beta'' chain; n=1; Selag... 38 0.35
UniRef50_Q5YF58 Cluster: DNA-directed RNA polymerase; n=6; Irido... 37 0.46
UniRef50_Q2N124 Cluster: RNA polymerase III large subunit; n=1; ... 37 0.61
UniRef50_A7AXE3 Cluster: RpoC2-N-terminal; n=1; Babesia bovis|Re... 36 0.81
UniRef50_Q9BHM4 Cluster: DNA-directed RNA polymerase; n=1; Pleis... 36 1.1
UniRef50_A7BNB4 Cluster: DNA-directed RNA polymerase beta chain;... 35 1.9
UniRef50_Q9BHZ7 Cluster: DNA-directed RNA polymerase; n=2; Gluge... 35 2.5
UniRef50_Q9BHM2 Cluster: DNA-directed RNA polymerase; n=5; Pleis... 35 2.5
UniRef50_Q9BHK6 Cluster: DNA-directed RNA polymerase; n=1; Sprag... 35 2.5
UniRef50_Q2N100 Cluster: RNA polymerase I large subunit; n=1; Ap... 34 3.3
UniRef50_UPI0000499144 Cluster: DNA repair protein RAD51C; n=1; ... 33 7.6
UniRef50_A7LI82 Cluster: Replication protein; n=10; unclassified... 33 7.6
UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD... 33 7.6
UniRef50_Q17B72 Cluster: Lysosomal trafficking regulator; n=3; C... 33 7.6
UniRef50_P42486 Cluster: DNA-directed RNA polymerase subunit 1; ... 33 7.6
UniRef50_A7PP92 Cluster: Chromosome chr8 scaffold_23, whole geno... 33 10.0
UniRef50_A5C3G1 Cluster: Putative uncharacterized protein; n=1; ... 33 10.0
>UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=473; cellular organisms|Rep: DNA-directed RNA
polymerase II subunit RPB1 - Homo sapiens (Human)
Length = 1970
Score = 160 bits (389), Expect = 3e-38
Identities = 82/126 (65%), Positives = 93/126 (73%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVFL G
Sbjct: 1087 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQ 1146
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTAXXXXXXXXXXXXXXXXXXKNLSMFTTKCLTLILAK 613
+ARDAE+AK++LCRLEHTTLRKVTA + + +A+
Sbjct: 1147 SARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206
Query: 614 ISPWLL 631
ISPWLL
Sbjct: 1207 ISPWLL 1212
Score = 112 bits (269), Expect = 1e-23
Identities = 53/84 (63%), Positives = 67/84 (79%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
DL PIKV++GV +L KK VIV GDD LS+QA ENATLLF +RSTLC++ ++EE RLS
Sbjct: 1003 DLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSG 1062
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AF+WL+GEIE++F QA +PGEM
Sbjct: 1063 EAFDWLLGEIESKFNQAIAHPGEM 1086
Score = 42.3 bits (95), Expect = 0.012
Identities = 22/35 (62%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Frame = +3
Query: 618 RLGYW--RIELDRKRMTDKKLTWEQIAEENLMAGF 716
R+ W R+ELDRK MTD+KLT EQIAE+ + AGF
Sbjct: 1206 RISPWLLRVELDRKHMTDRKLTMEQIAEK-INAGF 1239
>UniRef50_Q4SF83 Cluster: DNA-directed RNA polymerase; n=1; Tetraodon
nigroviridis|Rep: DNA-directed RNA polymerase - Tetraodon
nigroviridis (Green puffer)
Length = 1745
Score = 159 bits (387), Expect = 5e-38
Identities = 84/146 (57%), Positives = 97/146 (66%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISK+PK PSLTVFL G
Sbjct: 996 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQ 1055
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTAXXXXXXXXXXXXXXXXXXKNLSMFTTKCLTLILAK 613
AARDAE+AK++LCRLEHTTLRKVTA + + + +
Sbjct: 1056 AARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVEEDQEWVNVYYEMPDFDVTR 1115
Query: 614 ISPWLLAY*TGP*ENDRQEINMGTDC 691
ISPWLL + + G DC
Sbjct: 1116 ISPWLLRIELDRKHMTDSQTDHGADC 1141
Score = 96.7 bits (230), Expect = 5e-19
Identities = 45/77 (58%), Positives = 59/77 (76%)
Frame = +3
Query: 24 IKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSSVAFEWLI 203
+ G +L KK VIV GDD LS+QA +NATLLF +RSTLC+K ++EE RLS+ AF+WL+
Sbjct: 919 LSGTHELSKKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLL 978
Query: 204 GEIEARFQQAQVNPGEM 254
GEIE +F Q+ +PGEM
Sbjct: 979 GEIETKFNQSIAHPGEM 995
>UniRef50_Q9AXN0 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase -
Glaucosphaera vacuolata
Length = 1746
Score = 132 bits (319), Expect = 9e-30
Identities = 63/84 (75%), Positives = 72/84 (85%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+GA+A QS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIIN++K K PSLTV+L G
Sbjct: 1082 IGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKHCKTPSLTVYLRGE 1141
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
AARDAE+AK V L+HTTL VT
Sbjct: 1142 AARDAERAKQVQAELQHTTLNHVT 1165
Score = 58.4 bits (135), Expect = 2e-07
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 24/108 (22%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVA-------------GDD-----------RLSKQANENAT 110
DL+P ++KGV LL +C +VA GD +L+ +A ENAT
Sbjct: 974 DLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGDQVAEVDTNSVSRQLAVEAQENAT 1033
Query: 111 LLFQCLVRSTLCTKFVSEEHRLSSVAFEWLIGEIEARFQQAQVNPGEM 254
LL+ +R+ L +K + +E+RL AF L+GEIE RF A+ PGEM
Sbjct: 1034 LLWSIHIRAFLASKVILKEYRLDKKAFMHLLGEIENRFLHAKCPPGEM 1081
Score = 49.2 bits (112), Expect = 1e-04
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +1
Query: 511 TAIYYDPDPQNTVIAEDQEFVNVYYEMPD 597
T IYYDP+PQ+TVI DQE V YYE+PD
Sbjct: 1168 TEIYYDPNPQDTVIEADQELVRSYYELPD 1196
>UniRef50_A7AWJ0 Cluster: DNA-directed RNA polymerase II largest
subunit, putative; n=2; Eukaryota|Rep: DNA-directed RNA
polymerase II largest subunit, putative - Babesia bovis
Length = 1746
Score = 126 bits (303), Expect = 8e-28
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLG+PRLKE+IN+ + K PSLT+ L G
Sbjct: 1082 VGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVRNVKTPSLTIHLDRG 1141
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTA 508
A D E+AK++ RLE+TTL KV A
Sbjct: 1142 VAHDQERAKDMQTRLEYTTLDKVVA 1166
Score = 54.8 bits (126), Expect = 2e-06
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = +3
Query: 6 LSPIKVIKGVSDLLKKCVIVAGD---DRLSKQANENATLLFQCLVRSTLCTKFVSEEHRL 176
++P+ + + V LL IV D L+ +A ENAT+L + + + L ++ + E ++
Sbjct: 996 MNPVDIAQRVQQLLDSLTIVVTSGPHDILAAEAQENATILIKAHLSTALNSRRLMEREKI 1055
Query: 177 SSVAFEWLIGEIEARFQQAQVNPGE 251
++AF+WL+GE++ F ++ +PGE
Sbjct: 1056 GNLAFDWLLGEVKRIFYKSICHPGE 1080
Score = 33.9 bits (74), Expect = 4.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 517 IYYDPDPQNTVIAEDQEFVNVYYEMPDFD 603
+ YDP+ T++ +D +V YYE PD D
Sbjct: 1170 VIYDPNVSQTIVPKDYAWVREYYEFPDED 1198
>UniRef50_A5DCV3 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=193; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1579
Score = 125 bits (301), Expect = 1e-27
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +AAQS+GEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K P+LTV+L
Sbjct: 897 VGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKD 956
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTA 508
A D EKAK V +EHTTL+ VTA
Sbjct: 957 IAADIEKAKVVQSAIEHTTLKNVTA 981
Score = 98.7 bits (235), Expect = 1e-19
Identities = 45/84 (53%), Positives = 64/84 (76%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
DL ++++GV +L KK +++ GD L K++ ENATLLFQCLVRS L T+ V EE RL+
Sbjct: 813 DLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVRSRLATRRVIEEFRLNR 872
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
++FEW +GEIE +FQ++ V+PGEM
Sbjct: 873 MSFEWAMGEIETQFQKSLVHPGEM 896
Score = 41.5 bits (93), Expect = 0.022
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +1
Query: 511 TAIYYDPDPQNTVIAEDQEFVNVYYEMPD 597
T I+YDPDP++TV+ ED + V Y+ +PD
Sbjct: 983 TEIFYDPDPRSTVLEEDYDTVEAYFAIPD 1011
>UniRef50_Q5CUJ2 Cluster: DNA-directed RNA polymerase; n=3;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum Iowa II
Length = 1902
Score = 124 bits (300), Expect = 2e-27
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +AAQS+GEPATQMTLNTFHFAGV SKNVTLGVPRL+E+IN++K + P+LTV+L G
Sbjct: 1119 VGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESG 1178
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
A D E+AK+VL LEHT L+ +T
Sbjct: 1179 IANDQEQAKDVLTLLEHTMLQNIT 1202
Score = 53.2 bits (122), Expect = 7e-06
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVI-----VAGD---------DRLSKQANENATLLFQCLVRST 140
D P+ +IK V LL K ++ + D D + + +NAT L +RS+
Sbjct: 1021 DWGPVYIIKKVESLLDKLLLWKNVGIINDEGNKSNFVFDSIIAEVQKNATTLLGIHIRSS 1080
Query: 141 LCTKFVSEEHRLSSVAFEWLIGEIEARFQQAQVNPGEM 254
L +K + E RL AFEW++GEIE +F ++ + GEM
Sbjct: 1081 LASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEM 1118
Score = 34.3 bits (75), Expect = 3.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 517 IYYDPDPQNTVIAEDQEFVNVYYEMPD 597
I YDP+ T++ D+ +V+ YYE PD
Sbjct: 1207 ILYDPEQDKTIVEADKSWVSDYYEFPD 1233
Score = 33.1 bits (72), Expect = 7.6
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +3
Query: 618 RLGYW--RIELDRKRMTDKKLTWEQIAEENLM 707
RLG W RI+L+ K +TDKKL+ ++I ++ LM
Sbjct: 1240 RLGTWLLRIQLNNKLVTDKKLSMKEIGDKILM 1271
>UniRef50_A5K7P4 Cluster: DNA-directed RNA polymerase; n=13;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
vivax
Length = 2379
Score = 124 bits (300), Expect = 2e-27
Identities = 58/85 (68%), Positives = 72/85 (84%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGALAAQS+GEPATQMTLNTFHFAGV SKNVTLGVPRLKE+INI K K PS T++L
Sbjct: 1342 VGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINIVKNVKTPSTTIYLDDV 1401
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTA 508
+ D +KAK++L +LE+TTL+++T+
Sbjct: 1402 VSNDQQKAKDILTKLEYTTLKQLTS 1426
Score = 59.7 bits (138), Expect = 8e-08
Identities = 28/85 (32%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Frame = +3
Query: 6 LSPIKVIKGVSDLLKKCVIVA---GDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRL 176
++P+ ++ V+ L+K VI+ +D LS +A NAT+L + +R+ L +K +++ H++
Sbjct: 1256 VNPVDIVHKVNRFLEKLVIIKQINSNDTLSLEAQNNATVLLKAHLRTYLNSKLLTQTHKI 1315
Query: 177 SSVAFEWLIGEIEARFQQAQVNPGE 251
S +WL+ EIE F ++ +PGE
Sbjct: 1316 SMKGIDWLLQEIEKNFYKSLCHPGE 1340
Score = 35.1 bits (77), Expect = 1.9
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 508 YTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD 603
+ I YDP+ +T++ ED+ +V+ +YE PD D
Sbjct: 1427 HAQIIYDPNTTSTILEEDKLWVDEFYEFPDED 1458
>UniRef50_P14248 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=3; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Plasmodium falciparum (isolate CDC /
Honduras)
Length = 2452
Score = 124 bits (300), Expect = 2e-27
Identities = 58/85 (68%), Positives = 72/85 (84%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGALAAQS+GEPATQMTLNTFHFAGV SKNVTLGVPRLKE+INI K K PS T++L
Sbjct: 1405 VGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINIVKNVKTPSTTIYLDDM 1464
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTA 508
+ D +KAK++L +LE+TTL+++T+
Sbjct: 1465 VSNDQQKAKDILTKLEYTTLKQLTS 1489
Score = 61.3 bits (142), Expect = 2e-08
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Frame = +3
Query: 6 LSPIKVIKGVSDLLKKCVIVA---GDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRL 176
L+PI V+ V++ L+K VI+ +D LS +A NAT+L + +R+ L +K +++ H++
Sbjct: 1319 LNPIDVVHKVNNFLEKLVIIKQINSNDTLSVEAQNNATILLKAHLRTYLNSKLLTQTHKV 1378
Query: 177 SSVAFEWLIGEIEARFQQAQVNPGE 251
S +WL+ EIE F ++ +PGE
Sbjct: 1379 SVKGLDWLLQEIEKIFYKSLCHPGE 1403
Score = 37.9 bits (84), Expect = 0.27
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 508 YTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD 603
+ I YDP+ T++ ED+ +VN +YE PD D
Sbjct: 1490 HAQIIYDPNTTTTILEEDKSWVNEFYEFPDED 1521
>UniRef50_A3BPR9 Cluster: DNA-directed RNA polymerase; n=7;
Magnoliophyta|Rep: DNA-directed RNA polymerase - Oryza
sativa subsp. japonica (Rice)
Length = 1507
Score = 123 bits (296), Expect = 5e-27
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V+L
Sbjct: 735 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPE 794
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
+ E AKNV C LE+TTLR VT
Sbjct: 795 VNKKKELAKNVQCALEYTTLRSVT 818
Score = 90.2 bits (214), Expect = 5e-17
Identities = 40/84 (47%), Positives = 61/84 (72%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
D+ P+++++ + L ++ +V GDD +S +A +NATL F L+RST +K V +E+RL+
Sbjct: 651 DMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTK 710
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AFEW+IGEIE+RF Q+ V PGEM
Sbjct: 711 EAFEWVIGEIESRFLQSLVAPGEM 734
Score = 50.0 bits (114), Expect = 6e-05
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = +1
Query: 511 TAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD 603
T I+YDPDP T+I ED EFV YYEMPD D
Sbjct: 821 TEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 851
>UniRef50_P04050 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=225; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1733
Score = 121 bits (292), Expect = 2e-26
Identities = 58/84 (69%), Positives = 68/84 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+L G
Sbjct: 1064 VGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPG 1123
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
A D E+AK + +EHTTL+ VT
Sbjct: 1124 HAADQEQAKLIRSAIEHTTLKSVT 1147
Score = 73.7 bits (173), Expect = 4e-12
Identities = 33/84 (39%), Positives = 56/84 (66%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
DL+ ++ GV DL + +++ G + + + A +A LF CL+RS L T+ V +E+RL+
Sbjct: 980 DLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTK 1039
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AF+W++ IEA+F ++ V+PGEM
Sbjct: 1040 QAFDWVLSNIEAQFLRSVVHPGEM 1063
Score = 42.3 bits (95), Expect = 0.012
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +1
Query: 517 IYYDPDPQNTVIAEDQEFVNVYYEMPDFDPGENF 618
IYYDPDP++TVI ED+E + +++ + D + ++F
Sbjct: 1152 IYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSF 1185
>UniRef50_Q010D7 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase - Ostreococcus
tauri
Length = 1673
Score = 119 bits (287), Expect = 7e-26
Identities = 60/85 (70%), Positives = 68/85 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+G +AAQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIINI+K+ K PSLTV L
Sbjct: 1080 IGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKQIKTPSLTVALKPE 1139
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTA 508
A D KAK+V LE+TTL V A
Sbjct: 1140 FASDRTKAKDVQASLEYTTLHSVAA 1164
Score = 81.4 bits (192), Expect = 2e-14
Identities = 38/83 (45%), Positives = 56/83 (67%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
+LS VI+ V++LL K ++VAG D LS +A N TLLF VR+ L K V ++H+L+
Sbjct: 996 ELSVTHVIESVAELLPKLIVVAGTDPLSIEAQRNGTLLFFAHVRANLAAKRVLKDHKLTR 1055
Query: 183 VAFEWLIGEIEARFQQAQVNPGE 251
F+W+IGE+E+RF+ A PG+
Sbjct: 1056 AGFDWVIGEVESRFKMALAPPGD 1078
Score = 52.8 bits (121), Expect = 9e-06
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = +1
Query: 511 TAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD 603
T ++YDPDP +TVI ED+EFV YYEMPD D
Sbjct: 1166 TEVHYDPDPTDTVIEEDREFVRAYYEMPDED 1196
>UniRef50_Q8MX30 Cluster: DNA-directed RNA polymerase; n=1; Naegleria
gruberi|Rep: DNA-directed RNA polymerase - Naegleria
gruberi
Length = 1590
Score = 117 bits (282), Expect = 3e-25
Identities = 58/85 (68%), Positives = 68/85 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG++AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKE++N++K K P LT++L
Sbjct: 1030 VGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVAKNIKTPGLTIYLNNE 1089
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTA 508
D EKAK V LE+TTL VTA
Sbjct: 1090 YIGDFEKAKMVKEDLEYTTLGHVTA 1114
Score = 56.0 bits (129), Expect = 9e-07
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEH--RL 176
D++PI VI+ + L V++ G D LS +A NATLLF +RST K S ++ L
Sbjct: 945 DMNPIYVIEKIKKLCDDLVVIKGTDELSTEAQTNATLLFSMFLRSTFFFKGCSLKNCVLL 1004
Query: 177 SSVAFEWLIGEIEARFQQAQVNPGEM 254
WL+ ++E RF PGEM
Sbjct: 1005 KKPLTFWLV-KLELRFHNCLAQPGEM 1029
Score = 33.5 bits (73), Expect = 5.7
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 514 AIYYDPDPQNTVIAEDQEFVNVYYE 588
+I YDP+P N+VI ED+EF+ E
Sbjct: 1117 SIVYDPEPANSVIEEDREFIEELLE 1141
>UniRef50_Q4N0F9 Cluster: DNA-directed RNA polymerase II largest
subunit, putative; n=3; Apicomplexa|Rep: DNA-directed RNA
polymerase II largest subunit, putative - Theileria parva
Length = 1681
Score = 112 bits (270), Expect = 8e-24
Identities = 52/83 (62%), Positives = 65/83 (78%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLG+PRLKE+IN+ + PSLT++L
Sbjct: 1079 VGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNVRTPSLTIYLDPS 1138
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+D E+AK + LE+T K+
Sbjct: 1139 INKDQERAKEMQTLLEYTNFEKI 1161
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/85 (34%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
Frame = +3
Query: 6 LSPIKVIKGVSDLLKKCVIV---AGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRL 176
L+P+++ + + LL+ +I+ +D LS++A +NAT+L + +R L ++++ E+ ++
Sbjct: 993 LNPVEIAQRTNKLLESLIIINTSGPNDILSEEAQQNATILIKAHLRCHLNSRYLMEQVQI 1052
Query: 177 SSVAFEWLIGEIEARFQQAQVNPGE 251
SS+A +W+ GE+E F +A NPGE
Sbjct: 1053 SSLALDWVYGEVERCFFKAIANPGE 1077
Score = 37.1 bits (82), Expect = 0.46
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 508 YTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPG 609
YT +Y DP T+I ED E+V YYE PD + G
Sbjct: 1165 YTVVY-DPVVDRTIIEEDYEWVRDYYEFPDEEMG 1197
>UniRef50_Q84KP6 Cluster: DNA-directed RNA polymerase; n=3;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cyanidioschyzon merolae (Red alga)
Length = 1819
Score = 111 bits (266), Expect = 2e-23
Identities = 56/83 (67%), Positives = 66/83 (79%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+AAQSLGEPATQMTLNTFHFAGVS+KNVTLGVPRLKE+IN++++ K PS+TV+L G
Sbjct: 1078 VGAVAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVARQAKTPSVTVYLKSG 1137
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+D E A V LE LR V
Sbjct: 1138 --KDKELANIVQSELEQCRLRDV 1158
Score = 99.5 bits (237), Expect = 8e-20
Identities = 47/84 (55%), Positives = 61/84 (72%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
DL P ++I+GV LL++CV+V GDD LS++A NA LLF VR+ L TK V + HRL+S
Sbjct: 994 DLHPRQIIQGVRVLLQRCVVVPGDDELSREAQRNAVLLFAAHVRAELATKRVLQIHRLNS 1053
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AF WL+GEIE RF +A+ PGEM
Sbjct: 1054 KAFAWLLGEIETRFVRARATPGEM 1077
Score = 44.8 bits (101), Expect = 0.002
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +1
Query: 511 TAIYYDPDPQNTVIAEDQEFVNVYYEMPD 597
+AIY+DPDP NTV+ D+E+V Y+++PD
Sbjct: 1162 SAIYFDPDPANTVVEADREWVRDYFDLPD 1190
>UniRef50_Q9BMP2 Cluster: DNA-directed RNA polymerase; n=2;
Stylonychia|Rep: DNA-directed RNA polymerase -
Stylonychia mytilus
Length = 1678
Score = 108 bits (260), Expect = 1e-22
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG++ AQS+GEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIIN++K K PS+ +FL
Sbjct: 980 VGSIGAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKNIKTPSMKIFLKDK 1039
Query: 434 AARDAEKAKNVLCRLEHTTL 493
+D A + R+EHTTL
Sbjct: 1040 DKQDERIATIIGGRIEHTTL 1059
Score = 67.7 bits (158), Expect = 3e-10
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAG----DDRLSKQANENATLLFQCLVRSTLCTKFVSEEH 170
+L P V+ + +L+ + G D L +AN ++T LF+ +RS L +K V ++
Sbjct: 892 NLEPTYVLSRLQNLMDDLAPIPGVMIHKDPLILEANSDSTWLFKIYLRSLLNSKAVIQQE 951
Query: 171 RLSSVAFEWLIGEIEARFQQAQVNPGEM 254
RLS AF W++GEI++RF QA VNPGEM
Sbjct: 952 RLSKDAFNWILGEIKSRFDQALVNPGEM 979
Score = 42.7 bits (96), Expect = 0.009
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = +1
Query: 511 TAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD 603
+AIYYDPDP+ T++ ED+E + +Y E+ F+
Sbjct: 1066 SAIYYDPDPERTIVREDEELIRLYNEVRLFE 1096
>UniRef50_Q9AVW8 Cluster: DNA-directed RNA polymerase II largest
chain; n=1; Guillardia theta|Rep: DNA-directed RNA
polymerase II largest chain - Guillardia theta
(Cryptomonas phi)
Length = 1473
Score = 107 bits (256), Expect = 4e-22
Identities = 50/84 (59%), Positives = 64/84 (76%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG ++AQS+G+PATQMTLNTFHFAGVS+KNVTLGVPRLKEII+I K K+PSLT+FL
Sbjct: 1058 VGTISAQSIGQPATQMTLNTFHFAGVSAKNVTLGVPRLKEIIDIQKNIKSPSLTIFLHKK 1117
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
+ D K K + +E L +++
Sbjct: 1118 CSNDPRKVKKIQESIESVRLNRIS 1141
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 84 SKQANENATLLFQCLVRSTLCTKFVSEEHRLSSVAFEWLIGEIEARFQQAQVNPGEM 254
+KQ L +RS+L K + + L+ A W++ EI +++ + PGEM
Sbjct: 1001 NKQLINRDNFLLAIYIRSSLSLKIIYTKFNLNQHALNWIVNEICLSIRKSLIQPGEM 1057
>UniRef50_O77165 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase - Breviata
anathema
Length = 1690
Score = 99.1 bits (236), Expect = 1e-19
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+AAQS GEP TQMTLNTFH AGV +KNVTLGVPRLKE+IN++ + P++++F+
Sbjct: 1003 VGAIAAQSFGEPTTQMTLNTFHSAGVGTKNVTLGVPRLKELINVNMALRTPNISIFVQDP 1062
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTA 508
E A V ++HTT+R + +
Sbjct: 1063 FCNSEENATKVPLHIKHTTVRDLVS 1087
Score = 41.1 bits (92), Expect = 0.029
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +3
Query: 75 DRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSSVAFEWLIGEIEARFQQAQVNPGEM 254
D L ++ A +F ++R+ L +K + +H ++ + ++IGE+ +F +A V PGEM
Sbjct: 943 DPLGEEQRSTALTMFAIMLRAQLASKVMILKHHITLDCWGYIIGEVREKFGRALVAPGEM 1002
>UniRef50_P17545 Cluster: DNA-directed RNA polymerase II subunit
RPB1-B; n=60; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit RPB1-B - Trypanosoma brucei brucei
Length = 1766
Score = 97.9 bits (233), Expect = 2e-19
Identities = 51/86 (59%), Positives = 65/86 (75%), Gaps = 4/86 (4%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV--FL 424
N+GA+AAQS GEPATQMTLNTFH AG+SSKNVTLGVPRL E++N+S+ K S+TV F
Sbjct: 1084 NIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVSRNQKHASMTVSLFP 1143
Query: 425 TGGAARDAEKAKNVL--CRLEHTTLR 496
R+A+KA++++ C LE T R
Sbjct: 1144 PYDEKRNAQKAQHLIEYCTLESITRR 1169
Score = 46.4 bits (105), Expect = 8e-04
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +3
Query: 81 LSKQANENATLLFQCLVRSTLCTKFVSEEHRLSSVAFEWLIGEIEARFQQAQVNPGE 251
LS++ E+A LF +R L +K V +E++L+ AFE+L+ EI ++ Q+ PGE
Sbjct: 1027 LSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKEIRTKYHQSLTTPGE 1083
>UniRef50_Q27095 Cluster: DNA-directed RNA polymerase; n=2;
Trichomonas vaginalis|Rep: DNA-directed RNA polymerase -
Trichomonas vaginalis
Length = 1661
Score = 94.7 bits (225), Expect = 2e-18
Identities = 43/82 (52%), Positives = 60/82 (73%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +A QS+GEP+TQMTLNTFHFAG+S+ +VTLGVPRL E++N++K + PS+TV
Sbjct: 1084 VGTIAGQSIGEPSTQMTLNTFHFAGISAHDVTLGVPRLNELMNLAKHIRTPSVTVEFERD 1143
Query: 434 AARDAEKAKNVLCRLEHTTLRK 499
A+D E K V ++E + +K
Sbjct: 1144 VAKDEEIVKAVRAQIESASFKK 1165
Score = 69.3 bits (162), Expect = 9e-11
Identities = 32/84 (38%), Positives = 54/84 (64%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
DL+P+ +I V + + ++V G+D +S+ ENATLL + ++ S L K E+RL+
Sbjct: 1000 DLNPLDIISRVDECVNSLIVVKGNDNISRTEQENATLLLRIMLYSHLSAKQCIFEYRLNE 1059
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AF++++G I+ RF ++ V PGEM
Sbjct: 1060 QAFKYILGSIKDRFYRSIVAPGEM 1083
>UniRef50_P29158 Cluster: DNA-directed RNA polymerase subunit A'';
n=1; Thermococcus celer|Rep: DNA-directed RNA polymerase
subunit A'' - Thermococcus celer
Length = 393
Score = 93.9 bits (223), Expect = 4e-18
Identities = 44/83 (53%), Positives = 59/83 (71%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+G +AAQS+GEP+TQMTLNTFH+AGV+ NVTLG+PR+ EI++ K P P +TV+L
Sbjct: 64 IGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNPSTPIMTVYLDEE 123
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
D EKA V R+E T+L +
Sbjct: 124 HRYDREKALEVARRIEGTSLENL 146
>UniRef50_Q9YAU2 Cluster: DNA-directed RNA polymerase subunit A'';
n=19; Archaea|Rep: DNA-directed RNA polymerase subunit
A'' - Aeropyrum pernix
Length = 407
Score = 93.9 bits (223), Expect = 4e-18
Identities = 42/83 (50%), Positives = 59/83 (71%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +AAQS+GEP TQMTL TFH+AG+ +VTLG+PRL EI++ + P P + ++L
Sbjct: 63 VGTVAAQSIGEPGTQMTLRTFHYAGIMEFDVTLGLPRLIEIVDAKQTPSQPLMYIYLKDE 122
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
A+D EKAK ++E+TTL K+
Sbjct: 123 YAKDLEKAKEAARKIEYTTLEKI 145
>UniRef50_UPI00006CF1E9 Cluster: RNA polymerase Rpb1, domain 2 family
protein; n=1; Tetrahymena thermophila SB210|Rep: RNA
polymerase Rpb1, domain 2 family protein - Tetrahymena
thermophila SB210
Length = 1759
Score = 93.1 bits (221), Expect = 7e-18
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+GA++AQS+GEP TQMTLNTFHFAGVS +NVTLGVPRL+EI++ SK K P +TVF G
Sbjct: 1115 IGAISAQSVGEPTTQMTLNTFHFAGVSDRNVTLGVPRLQEILDASKNVKTPEMTVFFENG 1174
Score = 38.3 bits (85), Expect = 0.20
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 9 SPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATL-LFQCLVRSTLCTKFVSEEHRLSSV 185
+PI+V K + +L K DD K+ E +L LF+ +R L +K + H+LS
Sbjct: 1037 NPIQVYKSLLELFKNL-----DDYAVKRGMEYESLALFKAHIRLHLGSKKIVLRHKLSME 1091
Query: 186 AFEWLIGEIEARFQQAQVNPGE 251
F+ L EI +F++A +PGE
Sbjct: 1092 VFDKLTKEIFDKFKKAISHPGE 1113
>UniRef50_Q6IUR3 Cluster: DNA-directed RNA polymerase; n=3; Entamoeba
histolytica|Rep: DNA-directed RNA polymerase - Entamoeba
histolytica
Length = 1636
Score = 93.1 bits (221), Expect = 7e-18
Identities = 41/58 (70%), Positives = 51/58 (87%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLT 427
VG++AAQS+G PATQMTLNTFH AG+SS +VT GVPRLKE++N+SK PK PS+ V+LT
Sbjct: 1079 VGSIAAQSIGAPATQMTLNTFHHAGISSASVTEGVPRLKELLNVSKTPKTPSMNVYLT 1136
Score = 38.7 bits (86), Expect = 0.15
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAG--DDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRL 176
+L P VI+ + L+K+ + +D+ ++ ++A F L+ TL +K +H L
Sbjct: 993 NLDPKYVIERENALIKELSSIGAVKNDKFDEERFKDALGSFGKLLHCTLSSKQCLIQHHL 1052
Query: 177 SSVAFEWLIGEIEARFQQAQVNPGEM 254
S +F+ L+ I+ ++++ +NPGEM
Sbjct: 1053 SKESFDDLMDRIKNIYERSFINPGEM 1078
Score = 37.5 bits (83), Expect = 0.35
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 517 IYYDPDPQNTVIAEDQEFVNVYYEMPDFDPGENFALVIGVLNWTVR 654
I++DPD N+VI ED+EF+N + E+ + P E++ WT+R
Sbjct: 1168 IWFDPDIANSVIEEDREFINDFIEVEEIKP-EDYC------KWTIR 1206
>UniRef50_Q01DV6 Cluster: DNA-directed RNA polymerase; n=15;
Eukaryota|Rep: DNA-directed RNA polymerase - Ostreococcus
tauri
Length = 1406
Score = 92.7 bits (220), Expect = 9e-18
Identities = 47/83 (56%), Positives = 60/83 (72%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+ AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P ++ L
Sbjct: 1041 VGAVGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKSISTPIISASLM-- 1098
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+ RD + A+ V R+E TTL ++
Sbjct: 1099 SDRDVKAARVVKGRVEKTTLGEI 1121
>UniRef50_O28390 Cluster: DNA-directed RNA polymerase subunit A'';
n=7; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit A'' - Archaeoglobus fulgidus
Length = 380
Score = 92.7 bits (220), Expect = 9e-18
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +2
Query: 257 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGA 436
G +AAQS+GEP TQMT+ TFH+AGV+ NVTLG+PRL EI+++ K P P +T+ L
Sbjct: 60 GIVAAQSIGEPGTQMTMRTFHYAGVAEINVTLGLPRLIEILDVRKNPSTPMMTIRLLPEY 119
Query: 437 ARDAEKAKNVLCRLEHTTLRKV 502
A+D EKA+ V R+E T ++ V
Sbjct: 120 AKDREKAREVANRIEATYVKDV 141
>UniRef50_A7AP17 Cluster: RNA polymerase Rpb1, domain containing
protein; n=1; Babesia bovis|Rep: RNA polymerase Rpb1,
domain containing protein - Babesia bovis
Length = 1541
Score = 92.3 bits (219), Expect = 1e-17
Identities = 49/83 (59%), Positives = 58/83 (69%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+GAL AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN S + P + V L
Sbjct: 1201 IGALGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASSTIQTPIIEVPLINN 1260
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+D E A V R+E TTL +V
Sbjct: 1261 --KDFEYALMVKARIEKTTLGQV 1281
>UniRef50_UPI000049A544 Cluster: DNA-directed RNA polymerase III
largest subunit; n=1; Entamoeba histolytica
HM-1:IMSS|Rep: DNA-directed RNA polymerase III largest
subunit - Entamoeba histolytica HM-1:IMSS
Length = 1379
Score = 91.9 bits (218), Expect = 2e-17
Identities = 46/83 (55%), Positives = 60/83 (72%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGALA QS+GEP+TQM L TFHFAGV+S N+ LGVPR+KEIIN SKK + P +T L
Sbjct: 1036 VGALAGQSMGEPSTQMVLKTFHFAGVASMNIALGVPRIKEIINASKKIQTPIVTAKLVN- 1094
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
++D A+ V R+E T L+++
Sbjct: 1095 -SQDVTSARIVKGRIEATRLKEI 1116
>UniRef50_Q8SSC4 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=15; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Encephalitozoon cuniculi
Length = 1599
Score = 91.5 bits (217), Expect = 2e-17
Identities = 45/81 (55%), Positives = 58/81 (71%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG LAAQS+GEPATQMTLNTFH AGV+S VT+GVPRLKEI N++K K PS+ ++L
Sbjct: 1049 VGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLKEIFNVTKNLKTPSMKIYLDRE 1107
Query: 434 AARDAEKAKNVLCRLEHTTLR 496
+ E AK + +E T++
Sbjct: 1108 HGKSIEAAKTIQNEIECLTVK 1128
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +3
Query: 114 LFQCLVRSTLCTKFVSEEHRLSSVAFEWLIGEIEARFQQAQVNPGEM 254
+ L+R+ L K V EHRL++ AF W++ I+A+ +A++ P EM
Sbjct: 1002 ILNVLIRTNLSVKRVLLEHRLNTEAFNWVVEVIDAKILKAKITPNEM 1048
Score = 41.1 bits (92), Expect = 0.029
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 508 YTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD 603
++ IYYDP+ T I++D++FV Y+E PD D
Sbjct: 1133 FSEIYYDPEITGTEISDDKDFVEAYFEFPDED 1164
>UniRef50_Q54ZZ2 Cluster: DNA-directed RNA polymerase; n=2;
Dictyostelium discoideum|Rep: DNA-directed RNA polymerase
- Dictyostelium discoideum AX4
Length = 1450
Score = 91.1 bits (216), Expect = 3e-17
Identities = 48/83 (57%), Positives = 56/83 (67%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+ AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN +K P +T L
Sbjct: 1103 VGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITASL--N 1160
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
D A+ V R+E TTL V
Sbjct: 1161 CDYDIRSARIVAGRIEKTTLGHV 1183
>UniRef50_Q8TCW3 Cluster: DNA-directed RNA polymerase; n=17;
Metazoa|Rep: DNA-directed RNA polymerase - Homo sapiens
(Human)
Length = 435
Score = 91.1 bits (216), Expect = 3e-17
Identities = 48/84 (57%), Positives = 59/84 (70%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 302 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQL--D 359
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
DA+ A+ V R+E T L +++
Sbjct: 360 KDDDADYARLVKGRIEKTLLGEIS 383
>UniRef50_Q71ET7 Cluster: DNA-directed RNA polymerase; n=689;
Eukaryota|Rep: DNA-directed RNA polymerase - Zea mays
(Maize)
Length = 1009
Score = 90.2 bits (214), Expect = 5e-17
Identities = 40/84 (47%), Positives = 61/84 (72%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
D+ P+++++ + L ++ +V GDD +S +A +NATL F L+RST +K V +E+RL+
Sbjct: 917 DMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTK 976
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AFEW+IGEIE+RF Q+ V PGEM
Sbjct: 977 EAFEWVIGEIESRFLQSLVAPGEM 1000
>UniRef50_Q6JTX4 Cluster: RNA polymerase II largest subunit; n=6;
Panarthropoda|Rep: RNA polymerase II largest subunit -
Echiniscus viridissimus
Length = 95
Score = 89.4 bits (212), Expect = 8e-17
Identities = 41/81 (50%), Positives = 56/81 (69%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
DLSP +V++ V +L + V+V G D LS +A NAT L +RS LC+K V+E+HRL+S
Sbjct: 15 DLSPRRVVEEVRNLCSRLVVVKGTDYLSNEAQANATTLLHAFIRSMLCSKIVAEDHRLTS 74
Query: 183 VAFEWLIGEIEARFQQAQVNP 245
AF+WLIGE E+RF+ A P
Sbjct: 75 DAFDWLIGETESRFKAAVAEP 95
>UniRef50_A1RWW4 Cluster: DNA-directed RNA polymerase, subunit A'';
n=1; Thermofilum pendens Hrk 5|Rep: DNA-directed RNA
polymerase, subunit A'' - Thermofilum pendens (strain
Hrk 5)
Length = 403
Score = 89.4 bits (212), Expect = 8e-17
Identities = 42/83 (50%), Positives = 58/83 (69%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +AAQS+GEPATQMTL TFHFAGV NVTLG+PRL EI+++ ++P P + V+L
Sbjct: 65 VGMVAAQSIGEPATQMTLRTFHFAGVRELNVTLGLPRLIEIVDLRREPSTPIMEVYLEPE 124
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
A+D + A + +E TT+ +
Sbjct: 125 HAKDLDFALKIAREIELTTMENL 147
>UniRef50_O14802 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=17; Bilateria|Rep: DNA-directed RNA polymerase
III subunit RPC1 - Homo sapiens (Human)
Length = 1391
Score = 89.4 bits (212), Expect = 8e-17
Identities = 47/84 (55%), Positives = 58/84 (69%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGAL AQS+GEP TQMTL TFHF GV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFGGVASMNITLGVPRIKEIINASKAISTPIITAQL--D 1090
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
DA+ A+ V R+E T L +++
Sbjct: 1091 KDDDADYARLVKGRIEKTLLGEIS 1114
>UniRef50_O96452 Cluster: DNA-directed RNA polymerase; n=1;
Antonospora locustae|Rep: DNA-directed RNA polymerase -
Antonospora locustae (Nosema locustae)
Length = 1553
Score = 89.0 bits (211), Expect = 1e-16
Identities = 45/83 (54%), Positives = 60/83 (72%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG LAAQS+GEPATQMTLNTFH+AGV ++ +T GVPRLKEIIN++K + PS ++L G
Sbjct: 1027 VGTLAAQSIGEPATQMTLNTFHYAGV-AQAITQGVPRLKEIINVAKNIRTPSHKIYLKPG 1085
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+ E+AK V +E+ + V
Sbjct: 1086 ST--IEQAKKVASEIEYINIEMV 1106
Score = 37.1 bits (82), Expect = 0.46
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 517 IYYDPDPQNTVIAEDQEFVNVYYEMPD 597
I YDP T+I ED++FV Y+E PD
Sbjct: 1112 IIYDPKVDTTIINEDRDFVEAYFEFPD 1138
>UniRef50_Q03586 Cluster: DNA-directed RNA polymerase subunit A'';
n=6; Thermoplasmatales|Rep: DNA-directed RNA polymerase
subunit A'' - Thermoplasma acidophilum
Length = 508
Score = 89.0 bits (211), Expect = 1e-16
Identities = 42/83 (50%), Positives = 58/83 (69%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +AAQS+GEP TQMT+ TFHFAGV NVTLG+PRL EI++ + P PS+T++L
Sbjct: 183 VGIIAAQSIGEPGTQMTMRTFHFAGVREMNVTLGLPRLIEIVDARRIPSTPSMTIYLRPE 242
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+ E +V+ RLE+T++ V
Sbjct: 243 YETNDEVVMDVVKRLENTSISDV 265
>UniRef50_Q9VXP9 Cluster: DNA-directed RNA polymerase; n=4;
Diptera|Rep: DNA-directed RNA polymerase - Drosophila
melanogaster (Fruit fly)
Length = 1304
Score = 88.6 bits (210), Expect = 1e-16
Identities = 45/85 (52%), Positives = 58/85 (68%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+AAQS+GEP TQMTL TFHFAGV+S N+T GVPR+ EIIN +K P +T L
Sbjct: 946 VGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELEN- 1004
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTA 508
E A+ V R+E TTL ++++
Sbjct: 1005 -CHSMEFARQVKARIEKTTLAELSS 1028
>UniRef50_P04051 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=9; Dikarya|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1460
Score = 87.4 bits (207), Expect = 3e-16
Identities = 46/83 (55%), Positives = 54/83 (65%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+GA+ AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN SK P + L
Sbjct: 1089 IGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVND 1148
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
D A+ V R+E T L V
Sbjct: 1149 --NDERAARVVKGRVEKTLLSDV 1169
>UniRef50_Q3LWE3 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1510
Score = 87.0 bits (206), Expect = 4e-16
Identities = 40/80 (50%), Positives = 53/80 (66%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG + AQS+GEP TQMTLNTFH+AG++ K+VT GVPR E+IN +KKPK + L
Sbjct: 1047 VGVIGAQSIGEPTTQMTLNTFHYAGIAEKDVTTGVPRFNELINATKKPKTKCSYLSLIHN 1106
Query: 434 AARDAEKAKNVLCRLEHTTL 493
+ + E ++ RLE T L
Sbjct: 1107 SKLEIESTDFIISRLEETKL 1126
>UniRef50_Q3SE61 Cluster: DNA-directed RNA polymerase; n=2; Paramecium
tetraurelia|Rep: DNA-directed RNA polymerase - Paramecium
tetraurelia
Length = 1751
Score = 87.0 bits (206), Expect = 4e-16
Identities = 41/57 (71%), Positives = 50/57 (87%), Gaps = 1/57 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVS-SKNVTLGVPRLKEIINISKKPKAPSLTVF 421
VGA+AAQSLGEP TQMTLNTFH +GV+ KNVTLGVPRL+E+++ SKK K PSLT++
Sbjct: 1080 VGAIAAQSLGEPTTQMTLNTFHKSGVTGDKNVTLGVPRLQELLDASKKTKTPSLTIY 1136
Score = 37.9 bits (84), Expect = 0.27
Identities = 24/82 (29%), Positives = 46/82 (56%)
Frame = +3
Query: 6 LSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSSV 185
L+PI V + V +L++K + D + ++ LF+ ++ +L +K + HRL+
Sbjct: 1000 LNPIYVTQQVDELIQKVDKLLSYDL---EERKDCINLFRTHLKVSLASKDLCCRHRLTPE 1056
Query: 186 AFEWLIGEIEARFQQAQVNPGE 251
AF+ LI EI + +++ +PGE
Sbjct: 1057 AFQELISEIIYKLKKSMAHPGE 1078
>UniRef50_A5H289 Cluster: DNA-directed RNA polymerase; n=39;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase -
Phaeophyscia orbicularis
Length = 1007
Score = 84.6 bits (200), Expect = 2e-15
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
+L P +VI V LL + V+V GDD LSK+ NATLLF+ +RS L K + E+ L+
Sbjct: 921 NLHPAEVIPQVEQLLDRLVVVRGDDELSKEGQHNATLLFKAQLRSRLAFKRLVMENSLNK 980
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
+AF+ ++GEIE+RF +A VNPGEM
Sbjct: 981 LAFQHVLGEIESRFGRAAVNPGEM 1004
>UniRef50_A5K7T9 Cluster: DNA-directed RNA polymerase; n=1; Plasmodium
vivax|Rep: DNA-directed RNA polymerase - Plasmodium vivax
Length = 1946
Score = 84.2 bits (199), Expect = 3e-15
Identities = 45/84 (53%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG+++AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN S + P L + L
Sbjct: 1454 VGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASSTIQTPILNIPL--- 1510
Query: 434 AARDAEK-AKNVLCRLEHTTLRKV 502
+D+ A + +LE TT+R +
Sbjct: 1511 QVKDSYNFALMMKSKLEKTTVRDI 1534
>UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=6; Eukaryota|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Plasmodium falciparum
Length = 2339
Score = 84.2 bits (199), Expect = 3e-15
Identities = 44/83 (53%), Positives = 57/83 (68%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG+++AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN S + P L + L
Sbjct: 1783 VGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASNSIQTPILNIPLE-- 1840
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+ A + +LE TT+R +
Sbjct: 1841 VNDNYNFALMMKSKLEKTTIRDI 1863
>UniRef50_O17628 Cluster: DNA-directed RNA polymerase; n=3;
Caenorhabditis|Rep: DNA-directed RNA polymerase -
Caenorhabditis elegans
Length = 1737
Score = 83.8 bits (198), Expect = 4e-15
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLT 427
NVG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ SK PS ++ +
Sbjct: 1234 NVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVI 1293
Query: 428 GGAARD 445
G +RD
Sbjct: 1294 AGTSRD 1299
>UniRef50_A6SCV1 Cluster: DNA-directed RNA polymerase; n=19;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase -
Botryotinia fuckeliana B05.10
Length = 1468
Score = 83.8 bits (198), Expect = 4e-15
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+ AQS+GEP TQMTL TFHFAGV+ N+T GVPR+KEIIN SK P + L
Sbjct: 1084 VGAVGAQSIGEPGTQMTLKTFHFAGVAGMNLTAGVPRIKEIINASKTIATPFVKCPLLN- 1142
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+++ E A+ V R+E T L +V
Sbjct: 1143 -SKELEVARLVKARMEKTYLHEV 1164
>UniRef50_P15354 Cluster: DNA-directed RNA polymerase subunit A'';
n=6; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit A'' - Halobacterium salinarium (Halobacterium
halobium)
Length = 397
Score = 83.8 bits (198), Expect = 4e-15
Identities = 37/80 (46%), Positives = 56/80 (70%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG ++AQS+GEP TQMT+NTFH+AGV+ +VT G+PRL E+++ K P P + V+L
Sbjct: 63 VGTVSAQSIGEPGTQMTMNTFHYAGVAEMDVTQGLPRLIELVDARKTPDTPVMEVYLEDE 122
Query: 434 AARDAEKAKNVLCRLEHTTL 493
A + E+A V+ ++E T +
Sbjct: 123 YAEERERAHEVVWKIEATKI 142
>UniRef50_O94666 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=2; Dikarya|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Schizosaccharomyces pombe (Fission yeast)
Length = 1405
Score = 83.8 bits (198), Expect = 4e-15
Identities = 46/85 (54%), Positives = 58/85 (68%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+ AQS+GEP TQMTL TFHFAGV+++ TLGVPR+KEIIN +K P +T L
Sbjct: 1047 VGAIGAQSIGEPGTQMTLKTFHFAGVAAQ-TTLGVPRIKEIINAAKTISTPIITGQLIND 1105
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTA 508
RD A+ V R+E T L+ VT+
Sbjct: 1106 --RDERSARVVKGRIEKTYLKDVTS 1128
>UniRef50_Q4U940 Cluster: DNA-directed RNA polymerase III largest
subunit (RPC homologue), putative; n=2; Theileria|Rep:
DNA-directed RNA polymerase III largest subunit (RPC
homologue), putative - Theileria annulata
Length = 1648
Score = 83.0 bits (196), Expect = 7e-15
Identities = 44/83 (53%), Positives = 57/83 (68%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+GAL +QS+GEPATQMTL TFHFAGV+S NVTLGVPR++EIIN + P + V L
Sbjct: 1299 IGALGSQSIGEPATQMTLKTFHFAGVASMNVTLGVPRIQEIINATSLIATPIIEVPLEDK 1358
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+ E A V ++E TTL ++
Sbjct: 1359 TS--YEFALKVKSKIEKTTLGQI 1379
>UniRef50_Q74MX8 Cluster: NEQ427; n=1; Nanoarchaeum equitans|Rep:
NEQ427 - Nanoarchaeum equitans
Length = 374
Score = 82.6 bits (195), Expect = 9e-15
Identities = 39/82 (47%), Positives = 53/82 (64%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+G + AQS GEPATQM LN FHFAGVS + G+PRL EI+N KKP PS+T++L
Sbjct: 48 IGIITAQSFGEPATQMLLNAFHFAGVSELQLVTGLPRLIEILNAKKKPTIPSMTIYLEKN 107
Query: 434 AARDAEKAKNVLCRLEHTTLRK 499
+ AE+ N L ++ + + K
Sbjct: 108 DEKLAEELVNKLIEVKLSDIAK 129
>UniRef50_O27126 Cluster: DNA-directed RNA polymerase subunit A'';
n=4; Methanobacteriaceae|Rep: DNA-directed RNA
polymerase subunit A'' - Methanobacterium
thermoautotrophicum
Length = 451
Score = 82.6 bits (195), Expect = 9e-15
Identities = 38/83 (45%), Positives = 55/83 (66%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +AAQS+GEP TQMT+ TFH+AGV+ NVTLG+PRL EI++ KK P+++++ G
Sbjct: 132 VGTVAAQSVGEPGTQMTMRTFHYAGVAELNVTLGLPRLIEIVDARKKISTPTMSIYFEGD 191
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
D E + ++ +TL V
Sbjct: 192 LRYDEEFVRRKANKIGKSTLNDV 214
>UniRef50_Q9LVH0 Cluster: DNA-directed RNA polymerase; n=11;
Euphyllophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1383
Score = 82.2 bits (194), Expect = 1e-14
Identities = 47/101 (46%), Positives = 61/101 (60%)
Frame = +2
Query: 200 YRGNRGKIPASTSKSR*NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII 379
+R KI A T+ +G + AQS+GEP TQMTL TFHFAGV+S N+T GVPR+ EII
Sbjct: 1018 FRYREKKIEAGTA-----IGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEII 1072
Query: 380 NISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 502
N SK P ++ L + A+ V R+E TTL +V
Sbjct: 1073 NASKNISTPVISAELEN--PLELTSARWVKGRIEKTTLGQV 1111
>UniRef50_Q7YYV9 Cluster: DNA-directed RNA polymerase; n=3;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum
Length = 1907
Score = 82.2 bits (194), Expect = 1e-14
Identities = 45/85 (52%), Positives = 56/85 (65%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+AAQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN + K P + L
Sbjct: 1500 VGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAATKILTPIIEAKLEND 1559
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTA 508
+ D A+ V + T L +V +
Sbjct: 1560 S--DFNYAQIVKGSIVKTLLNEVVS 1582
>UniRef50_A2DEX5 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA polymerase
- Trichomonas vaginalis G3
Length = 1657
Score = 82.2 bits (194), Expect = 1e-14
Identities = 43/83 (51%), Positives = 58/83 (69%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+A QS+GEPATQMTL +FHFAGV+S NVTLGVPR++E++N + K P +T L
Sbjct: 1006 VGAVAGQSIGEPATQMTLRSFHFAGVASMNVTLGVPRIEEVMNAVSEIKTPIITANLL-- 1063
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+ RD A+ V ++ TL +V
Sbjct: 1064 SQRDEIAARIVKGIIDRVTLGQV 1086
>UniRef50_P15398 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=2; Fungi/Metazoa group|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 1689
Score = 81.8 bits (193), Expect = 2e-14
Identities = 40/76 (52%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLT 427
+VG LA+QS+GEP+TQMTLNTFHFAG +KNVTLG+PRL+EII S + P++T+ L
Sbjct: 1193 SVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLRLN 1252
Query: 428 GGAARDAEKAKNVLCR 475
G ++K + C+
Sbjct: 1253 DGV---SDKRASAFCK 1265
>UniRef50_Q7RQQ6 Cluster: DNA-directed RNA polymerase; n=9; Plasmodium
(Vinckeia)|Rep: DNA-directed RNA polymerase - Plasmodium
yoelii yoelii
Length = 2020
Score = 81.4 bits (192), Expect = 2e-14
Identities = 43/83 (51%), Positives = 57/83 (68%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG+++AQS+GEP TQMTL TFHFAGV+S NVTLGVPR+KEIIN S + P L + L
Sbjct: 1479 VGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASSIIQTPILNIPLR-- 1536
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+ A + +LE T++R +
Sbjct: 1537 IKDNYNFALMMKSKLEKTSIRDI 1559
>UniRef50_Q8SS15 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA polymerase
- Encephalitozoon cuniculi
Length = 1395
Score = 81.0 bits (191), Expect = 3e-14
Identities = 39/57 (68%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI-INISKKPKAPSLTV 418
+VG +AAQS+GEP+TQMTLNTFH AGV +KNVTLGVPRL+EI I SK + P +TV
Sbjct: 964 SVGVIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLREILITASKSIRTPLITV 1020
>UniRef50_A7J5B4 Cluster: RNA polymerase II largest subunit; n=61;
Ascomycota|Rep: RNA polymerase II largest subunit -
Ramalina complanata
Length = 1015
Score = 81.0 bits (191), Expect = 3e-14
Identities = 39/84 (46%), Positives = 57/84 (67%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
+L P +VI V LL + V+V G+D LSK+ NATLLF +RS L K + ++ L+
Sbjct: 915 NLHPAEVIPAVEKLLSRLVVVRGEDALSKEGQHNATLLFSAQLRSRLAFKRLVTQYNLNK 974
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
+AF+ ++GEIE+RF +A V+PGEM
Sbjct: 975 LAFQHVLGEIESRFNRAIVSPGEM 998
Score = 34.3 bits (75), Expect = 3.3
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMT 304
VG LAAQS+GEPATQMT
Sbjct: 999 VGVLAAQSIGEPATQMT 1015
>UniRef50_P91875 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=3; Sophophora|Rep: DNA-directed RNA polymerase I
subunit RPA1 - Drosophila melanogaster (Fruit fly)
Length = 1642
Score = 81.0 bits (191), Expect = 3e-14
Identities = 39/70 (55%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLTVFLTG 430
VG +AAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K PS+ + +
Sbjct: 1178 VGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKP 1237
Query: 431 GAARDAEKAK 460
G AEK +
Sbjct: 1238 GQQHQAEKLR 1247
>UniRef50_Q8SRM3 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA polymerase
- Encephalitozoon cuniculi
Length = 1349
Score = 79.4 bits (187), Expect = 9e-14
Identities = 42/83 (50%), Positives = 53/83 (63%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+A QS+GEP TQMTL TFHFAGV+S N+TLGVPRLKEIIN P + L
Sbjct: 1025 VGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIINAVCNISTPIINAELDD- 1083
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
D + + + RL+ +L+ V
Sbjct: 1084 -PHDLFRTEVIKGRLDRISLKDV 1105
>UniRef50_P08968 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase III subunit RPC1 - Trypanosoma brucei brucei
Length = 1530
Score = 79.0 bits (186), Expect = 1e-13
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT--VFLTG 430
GA+AAQS+GEP+TQMTL TFHFAGV+S ++T GVPRL E+IN ++ P +T V L
Sbjct: 1146 GAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEVINANRNIATPVVTAPVLLME 1205
Query: 431 GAARDAE----KAKNVLCRLEHTTLRKVTA 508
G E +A+ V ++E LR+V +
Sbjct: 1206 GEENHCEIFRKRARFVKAQIERVLLREVVS 1235
>UniRef50_UPI0000E46841 Cluster: PREDICTED: similar to RNA polymerase
I large subunit; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to RNA polymerase I large subunit -
Strongylocentrotus purpuratus
Length = 1742
Score = 78.6 bits (185), Expect = 2e-13
Identities = 37/56 (66%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLTV 418
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K PS+T+
Sbjct: 1212 VGLLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMVASANIKTPSMTI 1267
>UniRef50_UPI0000D56583 Cluster: PREDICTED: similar to CG10122-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG10122-PA - Tribolium castaneum
Length = 1619
Score = 78.6 bits (185), Expect = 2e-13
Identities = 43/78 (55%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLTV-FL- 424
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + SK K PS+ + FL
Sbjct: 1178 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPFLP 1237
Query: 425 TGGAARDAEKAKNVLCRL 478
AE + +L R+
Sbjct: 1238 VENLEEKAEDLRKMLTRV 1255
>UniRef50_UPI00004998AA Cluster: DNA-directed RNA polymerase I largest
subunit; n=4; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase I largest subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1522
Score = 78.6 bits (185), Expect = 2e-13
Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKA-PSLTVFLTG 430
VG LA QS+GEP+TQMTLNTFH AG NVTLG+PR+KE++ +KK A PS+ ++L
Sbjct: 1084 VGVLAGQSIGEPSTQMTLNTFHLAGRGDVNVTLGMPRIKELVMFAKKEIATPSMILYLKE 1143
Query: 431 GAARDAEKAKNVLCRL 478
++ EK +L ++
Sbjct: 1144 PNQKNTEKLAKLLTKV 1159
>UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes
aegypti|Rep: DNA-directed RNA polymerase - Aedes aegypti
(Yellowfever mosquito)
Length = 1686
Score = 78.6 bits (185), Expect = 2e-13
Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLTVFLTG 430
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S++ K PS+ +
Sbjct: 1184 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASQRIKTPSMEIPF-- 1241
Query: 431 GAARDAEKAKNVLCRLEHTTLRKVT 505
A + K N TL +VT
Sbjct: 1242 -RAFKSHKKLNTAAERMRKTLNRVT 1265
>UniRef50_Q7RXJ6 Cluster: DNA-directed RNA polymerase; n=4; root|Rep:
DNA-directed RNA polymerase - Neurospora crassa
Length = 1533
Score = 78.2 bits (184), Expect = 2e-13
Identities = 41/83 (49%), Positives = 54/83 (65%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+ AQS+GEP TQMTL TFHFAGV+ ++T GVPR+KEII SK P ++ L
Sbjct: 1110 VGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIGASKLISTPVISCELENN 1169
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
RD + A+ V ++E T + V
Sbjct: 1170 --RDIKAARIVKGKIEKTYISDV 1190
>UniRef50_UPI00015B5184 Cluster: PREDICTED: similar to DNA-directed
RNA polymerase I largest subunit; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to DNA-directed RNA
polymerase I largest subunit - Nasonia vitripennis
Length = 1694
Score = 77.8 bits (183), Expect = 3e-13
Identities = 37/56 (66%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLTV 418
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + SK K PS+ +
Sbjct: 1202 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEI 1257
>UniRef50_UPI0000DB7146 Cluster: PREDICTED: similar to RNA polymerase
I subunit CG10122-PA; n=1; Apis mellifera|Rep: PREDICTED:
similar to RNA polymerase I subunit CG10122-PA - Apis
mellifera
Length = 1665
Score = 77.8 bits (183), Expect = 3e-13
Identities = 37/56 (66%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLTV 418
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + SK K PS+ +
Sbjct: 1161 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEI 1216
>UniRef50_UPI0000ECC670 Cluster: DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194).; n=5; Gallus gallus|Rep: DNA-directed
RNA polymerase I largest subunit (EC 2.7.7.6) (RNA
polymerase I 194 kDa subunit) (RPA194). - Gallus gallus
Length = 917
Score = 77.8 bits (183), Expect = 3e-13
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLTVFLTG 430
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P ++V +
Sbjct: 415 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL- 473
Query: 431 GAARDAEKAKNVLCRLEHTTLRKV 502
G + +K K + +L L +V
Sbjct: 474 GTKKAHKKVKQLKKQLTRVCLAEV 497
>UniRef50_A7S9W9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1242
Score = 77.4 bits (182), Expect = 4e-13
Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLTG 430
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PR++EI+ S K P++ + L
Sbjct: 761 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRMREILMTASANIKTPTMDMPLLA 820
Query: 431 GAARDAEKAKNVLCRLEHTTLRKV 502
G + ++AK + +L L +V
Sbjct: 821 G-KKVIKRAKKLQQKLNRVMLSQV 843
>UniRef50_A0DJB3 Cluster: DNA-directed RNA polymerase; n=2;
Oligohymenophorea|Rep: DNA-directed RNA polymerase -
Paramecium tetraurelia
Length = 1696
Score = 77.4 bits (182), Expect = 4e-13
Identities = 35/56 (62%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTV 418
VG +AAQS+GEP+TQMTLNTFH AG KNVTLG+PRL+EI+ +KK K P++++
Sbjct: 1234 VGCVAAQSIGEPSTQMTLNTFHLAGHGEKNVTLGIPRLREILMTATKKQKTPTMSL 1289
>UniRef50_A4RCX8 Cluster: DNA-directed RNA polymerase; n=3;
Sordariomycetes|Rep: DNA-directed RNA polymerase -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1719
Score = 77.4 bits (182), Expect = 4e-13
Identities = 40/77 (51%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLTG 430
VG +A QS+GEP+TQMTLNTFH AG S+KNVTLG+PRL+E++ S K PS+T+ L
Sbjct: 1215 VGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLRELLMTASSKISTPSMTLILNE 1274
Query: 431 G-AARDAEKAKNVLCRL 478
+ D EK + L
Sbjct: 1275 EMSPADGEKFAKAISML 1291
>UniRef50_Q8PUR2 Cluster: DNA-directed RNA polymerase subunit A'';
n=3; Methanosarcina|Rep: DNA-directed RNA polymerase
subunit A'' - Methanosarcina mazei (Methanosarcina
frisia)
Length = 408
Score = 77.4 bits (182), Expect = 4e-13
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Frame = +2
Query: 257 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLT--- 427
G +AAQS+GEP TQMT+ TFH+AGV+ NVTLG+PRL EI++ K P P +T+ L+
Sbjct: 63 GVVAAQSIGEPGTQMTMRTFHYAGVAEINVTLGLPRLIEIVDARKIPSTPMMTIALSKEH 122
Query: 428 -GGAARDAEKAKNVLCRLEHTTL 493
A D EK + + +E T +
Sbjct: 123 PEDYAYDREKTRALAWEIEATKI 145
>UniRef50_A7PWB4 Cluster: Chromosome chr8 scaffold_34, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr8 scaffold_34, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1518
Score = 77.0 bits (181), Expect = 5e-13
Identities = 41/85 (48%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLTG 430
VG LAAQS+GEP+TQMTLNTFH AG NVTLG+PRL+EI+ + K P +T L
Sbjct: 1069 VGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQM 1128
Query: 431 GAARDAEKAKNVLCRLEHTTLRKVT 505
G ++D A+ + +L+ T+ +T
Sbjct: 1129 GRSKD--DAERLAAKLKKVTVADIT 1151
>UniRef50_Q3SE62 Cluster: DNA-directed RNA polymerase; n=3; Paramecium
tetraurelia|Rep: DNA-directed RNA polymerase - Paramecium
tetraurelia
Length = 1368
Score = 77.0 bits (181), Expect = 5e-13
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
+VG + +QS+GEPATQMTL TFH AGV+ ++T GVPRL EIIN SK+ K P + V L
Sbjct: 982 SVGPITSQSIGEPATQMTLKTFHSAGVAGMSITQGVPRLNEIINASKEIKTPQINVKLIN 1041
Query: 431 GAARDAEK 454
D K
Sbjct: 1042 RQVMDHAK 1049
>UniRef50_Q6E6G2 Cluster: DNA-directed RNA polymerase; n=1;
Antonospora locustae|Rep: DNA-directed RNA polymerase -
Antonospora locustae (Nosema locustae)
Length = 1089
Score = 76.6 bits (180), Expect = 6e-13
Identities = 37/56 (66%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLTV 418
VG +A QSLGEP+TQMTLNTFH AGV +KN+TLG+PRL EI+ + SK + P LTV
Sbjct: 917 VGIVAGQSLGEPSTQMTLNTFHHAGVGAKNMTLGIPRLVEILMVASKNIRTPYLTV 972
>UniRef50_Q9SVY0 Cluster: DNA-directed RNA polymerase I 190K
chain-like protein; n=1; Arabidopsis thaliana|Rep:
DNA-directed RNA polymerase I 190K chain-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1670
Score = 76.2 bits (179), Expect = 8e-13
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +2
Query: 212 RGKIPASTSKSR*NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NIS 388
+ K AS ++ VG LAAQS+GEP+TQMTLNTFH AG NVTLG+PRL+EI+ +
Sbjct: 1144 KSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAA 1203
Query: 389 KKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 502
K P +T L G + E A ++ RL T+ +
Sbjct: 1204 ANIKTPIMTCPLLKGKTK--EDANDITDRLRKITVADI 1239
>UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus tauri
Length = 1789
Score = 76.2 bits (179), Expect = 8e-13
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLTG 430
VG +AAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+E++ S+K P + + L
Sbjct: 1284 VGVVAAQSVGEPSTQMTLNTFHFAGRGEANVTLGIPRLRELLMAASRKLLTPVMVLPLRK 1343
Query: 431 GAARDAEKAKNVLCR 475
G R E A N LCR
Sbjct: 1344 G-YRSKEHA-NTLCR 1356
>UniRef50_Q7RWI3 Cluster: DNA-directed RNA polymerase; n=4;
Pezizomycotina|Rep: DNA-directed RNA polymerase -
Neurospora crassa
Length = 1674
Score = 76.2 bits (179), Expect = 8e-13
Identities = 35/57 (61%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVF 421
VG +A QS+GEP+TQMTLNTFH AG S+KNVTLG+PRL+EI+ S K P++T++
Sbjct: 1185 VGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASSKISTPAMTLY 1241
>UniRef50_Q0PQ09 Cluster: DNA-directed RNA polymerase; n=8;
Pezizomycotina|Rep: DNA-directed RNA polymerase -
Dermatocarpon miniatum
Length = 1011
Score = 76.2 bits (179), Expect = 8e-13
Identities = 38/84 (45%), Positives = 55/84 (65%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
DL P VI V LL + ++V G+DR+S +A ENATLL + +RS L K + E+ L+
Sbjct: 911 DLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNR 970
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
+AF+ ++G IE RF +A +PGEM
Sbjct: 971 LAFDHVVGAIETRFIKAAASPGEM 994
Score = 34.3 bits (75), Expect = 3.3
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMT 304
VG LAAQS+GEPATQMT
Sbjct: 995 VGVLAAQSIGEPATQMT 1011
>UniRef50_A6SJ73 Cluster: DNA-directed RNA polymerase; n=2;
Sclerotiniaceae|Rep: DNA-directed RNA polymerase -
Botryotinia fuckeliana B05.10
Length = 1774
Score = 76.2 bits (179), Expect = 8e-13
Identities = 37/58 (63%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFL 424
VG +A QS+GEP+TQMTLNTFH AG SSKNVTLG+PRL+EI+ S PS+T+ L
Sbjct: 1194 VGIVAGQSVGEPSTQMTLNTFHLAGHSSKNVTLGIPRLREIVMTASNHISTPSMTLTL 1251
>UniRef50_A1CP71 Cluster: DNA-directed RNA polymerase; n=8;
Eurotiomycetidae|Rep: DNA-directed RNA polymerase -
Aspergillus clavatus
Length = 1734
Score = 76.2 bits (179), Expect = 8e-13
Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLTG 430
VG +A QS+GEP+TQMTLNTFH AG S+KNVTLG+PRL+EI+ S P++T+ L
Sbjct: 1249 VGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAHIMTPTMTLILNE 1308
Query: 431 GAAR-DAEKAKNVLCRL 478
++ D+E+ + +L
Sbjct: 1309 ELSKEDSERFAKAISKL 1325
>UniRef50_O95602 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=39; Euteleostomi|Rep: DNA-directed RNA polymerase I
subunit RPA1 - Homo sapiens (Human)
Length = 1717
Score = 76.2 bits (179), Expect = 8e-13
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP--SLTVFL 424
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P S+ V
Sbjct: 1212 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLN 1271
Query: 425 TGGAARDAEKAKNVLCRL 478
T A + + K L R+
Sbjct: 1272 TKKALKRVKSLKKQLTRV 1289
>UniRef50_Q22M85 Cluster: DNA-directed RNA polymerase; n=1;
Tetrahymena thermophila SB210|Rep: DNA-directed RNA
polymerase - Tetrahymena thermophila SB210
Length = 1418
Score = 75.4 bits (177), Expect = 1e-12
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+ A S+ EPATQMTL +FHFAGV+S N+T GVPR+KEII+ +KK P + V L
Sbjct: 1047 VGAVGATSISEPATQMTLKSFHFAGVASMNITQGVPRMKEIIDAAKKISTPIIDVKLL-P 1105
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
+ +++ ++E T L +++
Sbjct: 1106 QFQSEHSYRSIRLQIEKTYLGEIS 1129
>UniRef50_A3FQH3 Cluster: DNA-directed RNA polymerase; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum Iowa II
Length = 1805
Score = 75.4 bits (177), Expect = 1e-12
Identities = 34/55 (61%), Positives = 41/55 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 418
VG LAAQS+GEPATQMTLNTFH AG + NVTLG+PRLKE++ K P + +
Sbjct: 1581 VGCLAAQSIGEPATQMTLNTFHLAGHGAANVTLGIPRLKELLQTGGDSKTPYIFI 1635
>UniRef50_Q5TMU2 Cluster: DNA-directed RNA polymerase; n=1;
Anopheles gambiae str. PEST|Rep: DNA-directed RNA
polymerase - Anopheles gambiae str. PEST
Length = 785
Score = 74.1 bits (174), Expect = 3e-12
Identities = 35/56 (62%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIIN-ISKKPKAPSLTV 418
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + + K PS+ +
Sbjct: 727 VGVLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMCAAAEIKTPSMEI 782
>UniRef50_UPI0000F1FC15 Cluster: PREDICTED: similar to polymerase
(RNA) I polypeptide A, 194kDa; n=1; Danio rerio|Rep:
PREDICTED: similar to polymerase (RNA) I polypeptide A,
194kDa - Danio rerio
Length = 1221
Score = 73.7 bits (173), Expect = 4e-12
Identities = 34/56 (60%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLTV 418
VG +AAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P +++
Sbjct: 732 VGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNIKTPMMSI 787
>UniRef50_Q4PB85 Cluster: DNA-directed RNA polymerase; n=1; Ustilago
maydis|Rep: DNA-directed RNA polymerase - Ustilago maydis
(Smut fungus)
Length = 1795
Score = 73.7 bits (173), Expect = 4e-12
Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLTG 430
VG LAAQ +GEP+TQMTLNTFHFAG + NVTLG+PRL+EI+ S+ K P + + +
Sbjct: 1275 VGLLAAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQHIKTPIMRLPVLD 1334
Query: 431 GAARDAEK 454
G D K
Sbjct: 1335 GITADQIK 1342
>UniRef50_Q4UI00 Cluster: DNA-directed RNA polymerase; n=2;
Theileria|Rep: DNA-directed RNA polymerase - Theileria
annulata
Length = 1999
Score = 73.3 bits (172), Expect = 6e-12
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +A QS+GEPATQMTLNTFH AG + NVTLG+PRL EI+ + P +V + G
Sbjct: 1404 VGCIAGQSIGEPATQMTLNTFHLAGHGAANVTLGIPRLVEILQNTSHCSTPYFSVPILGK 1463
Query: 434 AARD-AEKAKNVLCRLEHTTLRKV 502
+ AE A+N + L L +
Sbjct: 1464 NEDEIAENAENAINALRKIYLSDI 1487
>UniRef50_A2GJD3 Cluster: DNA-directed RNA polymerase; n=3;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 1004
Score = 73.3 bits (172), Expect = 6e-12
Identities = 35/83 (42%), Positives = 52/83 (62%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +AA+++GEPATQMTLNTFH AG NVTLG+PRL+EI+ ++ + P+ +
Sbjct: 691 VGVIAAEAIGEPATQMTLNTFHLAGYGGTNVTLGIPRLREILIVA--TRTPATPMMFLSL 748
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+ D +K + L + L+ V
Sbjct: 749 SMDDEKKCQEFLTEFKRIPLKDV 771
>UniRef50_Q0V3B7 Cluster: DNA-directed RNA polymerase; n=2;
Ascomycota|Rep: DNA-directed RNA polymerase -
Phaeosphaeria nodorum (Septoria nodorum)
Length = 1467
Score = 73.3 bits (172), Expect = 6e-12
Identities = 42/83 (50%), Positives = 52/83 (62%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+ AQS+GEP TQMTL TFHFAGV+ GVPR+KEIIN S P +T L+
Sbjct: 1103 VGAIGAQSIGEPGTQMTLKTFHFAGVA------GVPRIKEIINASSTISTPVITCVLSNK 1156
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
+ A A+ V R+E T LR +
Sbjct: 1157 ISESA--ARIVKARVEKTYLRDI 1177
>UniRef50_A6R8S3 Cluster: DNA-directed RNA polymerase; n=1;
Ajellomyces capsulatus NAm1|Rep: DNA-directed RNA
polymerase - Ajellomyces capsulatus NAm1
Length = 1573
Score = 73.3 bits (172), Expect = 6e-12
Identities = 34/56 (60%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLT 415
+VG +A QS+GEP+TQMTLNTFH AG S+KNVTLG+PRL+EI+ S + P++T
Sbjct: 1079 SVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASNQILTPTMT 1134
>UniRef50_P10964 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=11; Saccharomycetales|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1664
Score = 73.3 bits (172), Expect = 6e-12
Identities = 34/56 (60%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTV 418
VG +A+QS+GEP+TQMTLNTFHFAG + NVTLG+PRL+EI+ S K P +T+
Sbjct: 1185 VGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTL 1240
>UniRef50_Q8LLJ6 Cluster: DNA-directed RNA polymerase; n=1; Ochromonas
danica|Rep: DNA-directed RNA polymerase - Ochromonas
danica
Length = 1064
Score = 72.9 bits (171), Expect = 8e-12
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 LSPIKVIKGVSDLLKK-CVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
+ P V+ V L ++ +IV G D +S++A NATLLFQ LVRS L TK V ++RL+
Sbjct: 964 MHPRIVLDAVKKLCQEDLLIVRGSDPISREAQSNATLLFQILVRSKLATKRVLRDYRLTK 1023
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
A EW++G I + F+ + V+PGEM
Sbjct: 1024 DALEWVVGAIVSDFRASVVHPGEM 1047
Score = 32.7 bits (71), Expect = 10.0
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 257 GALAAQSLGEPATQMT 304
G LAAQS+GEPATQMT
Sbjct: 1049 GVLAAQSIGEPATQMT 1064
>UniRef50_A5KB21 Cluster: DNA-directed RNA polymerase; n=1; Plasmodium
vivax|Rep: DNA-directed RNA polymerase - Plasmodium vivax
Length = 2695
Score = 72.9 bits (171), Expect = 8e-12
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL-- 424
++G L AQS GEPATQMTLNTFH AG ++NVT+G+PRLKEI SK P + V +
Sbjct: 1809 SIGILVAQSFGEPATQMTLNTFHLAG--TENVTMGIPRLKEIFLTSKLTSKPMIYVPIKM 1866
Query: 425 --TGGAARDAEKAKNVL 469
G DA + KN +
Sbjct: 1867 EARGATGNDASEMKNYI 1883
>UniRef50_Q4A369 Cluster: DNA-directed RNA polymerase; n=1; Emiliania
huxleyi virus 86|Rep: DNA-directed RNA polymerase -
Emiliania huxleyi virus 86
Length = 1468
Score = 72.5 bits (170), Expect = 1e-11
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG AA S+GEP+TQMTLN+FH AG VT+G+PRLKE++ SK+ + P T+ +
Sbjct: 1036 VGNTAALSIGEPSTQMTLNSFHTAGTGHAGVTMGIPRLKEVMGYSKQLRTPQTTLEFSD- 1094
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
+ E+ K + +L TL VT
Sbjct: 1095 --KTPEELKAISAKLTRLTLSHVT 1116
>UniRef50_Q23DD6 Cluster: DNA-directed RNA polymerase; n=1;
Tetrahymena thermophila SB210|Rep: DNA-directed RNA
polymerase - Tetrahymena thermophila SB210
Length = 1727
Score = 72.5 bits (170), Expect = 1e-11
Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLT 427
+VG LAAQ++GEP+TQMTLNTFH AG N+TLG+PRL+EI+ + K K P + + L+
Sbjct: 1266 SVGCLAAQAIGEPSTQMTLNTFHLAGHGGVNLTLGIPRLREILMTATDKLKTPVMLLNLS 1325
Query: 428 G-GAARDAEKAKNVLCRLEHTTL 493
A++ E+ +N +L+ L
Sbjct: 1326 NPEVAQNKEQVQNHARKLQKINL 1348
>UniRef50_Q5KIF6 Cluster: DNA-directed RNA polymerase; n=1;
Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 1727
Score = 72.5 bits (170), Expect = 1e-11
Identities = 33/54 (61%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSL 412
VG LA+Q +GEP+TQMTLNTFH AG + NVTLG+PRL+EI+ S KP P++
Sbjct: 1247 VGLLASQGVGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIVMTASSKPTTPTM 1300
>UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasmodium
falciparum|Rep: DNA-directed RNA polymerase - Plasmodium
falciparum
Length = 2910
Score = 72.1 bits (169), Expect = 1e-11
Identities = 39/76 (51%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV---F 421
++G L AQS GEPATQMTLNTFH AG ++NVT+G+PRLKEI SK P + V
Sbjct: 2060 SIGILVAQSFGEPATQMTLNTFHLAG--TENVTMGIPRLKEIFLTSKLTSKPMIYVPIKL 2117
Query: 422 LTGGAARDAEKAKNVL 469
DA K KN +
Sbjct: 2118 QVDNLKNDANKMKNYI 2133
>UniRef50_Q98RN1 Cluster: DNA-directed RNA polymerase; n=1; Guillardia
theta|Rep: DNA-directed RNA polymerase - Guillardia theta
(Cryptomonas phi)
Length = 1289
Score = 71.3 bits (167), Expect = 2e-11
Identities = 31/54 (57%), Positives = 41/54 (75%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 415
VG ++AQSLGEP TQMTL TFH AG S+N+T G+PR+ EI++ SK K P ++
Sbjct: 959 VGCISAQSLGEPGTQMTLQTFHSAGTGSQNITSGIPRINEILSNSKNTKFPLIS 1012
>UniRef50_A5BD07 Cluster: DNA-directed RNA polymerase; n=1; Vitis
vinifera|Rep: DNA-directed RNA polymerase - Vitis
vinifera (Grape)
Length = 1350
Score = 70.9 bits (166), Expect = 3e-11
Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLTG 430
VG LAAQS+GEP+TQMTLNTFH AG NVTLG+PRL+EI+ + K P +T L
Sbjct: 1287 VGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQM 1346
Query: 431 GAAR 442
G ++
Sbjct: 1347 GRSK 1350
>UniRef50_A7ARZ5 Cluster: DNA directed RNA polymerase; n=1; Babesia
bovis|Rep: DNA directed RNA polymerase - Babesia bovis
Length = 2016
Score = 70.9 bits (166), Expect = 3e-11
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +A QS+GEPATQMTLNTFH AG + NVTLG+PRL E++ + P + L G
Sbjct: 1400 VGCIAGQSIGEPATQMTLNTFHLAGHGATNVTLGIPRLVELMQTTGSASTPYFSAPLLGD 1459
Query: 434 A----ARDAEKAKNVL 469
+ A +A+ A N L
Sbjct: 1460 SDDNIAHNAQLAINAL 1475
>UniRef50_Q6C1S4 Cluster: DNA-directed RNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA-directed RNA polymerase - Yarrowia
lipolytica (Candida lipolytica)
Length = 1628
Score = 70.9 bits (166), Expect = 3e-11
Identities = 32/56 (57%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTV 418
+G +A+QS+GEP+TQMTLNTFHFAG + NVTLG+PR++EII SK P +++
Sbjct: 1155 LGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASKSIMTPQMSL 1210
>UniRef50_P25202 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=2; Giardia intestinalis|Rep: DNA-directed RNA
polymerase III subunit RPC1 - Giardia lamblia (Giardia
intestinalis)
Length = 1741
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/56 (60%), Positives = 43/56 (76%)
Frame = +2
Query: 257 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 424
GA+AAQS+GEP+TQMTL +FH AG++S N+T GVPRLKEI++ K P TV L
Sbjct: 1295 GAVAAQSVGEPSTQMTLKSFHHAGLASMNITQGVPRLKEIVDGVVKISTPITTVEL 1350
>UniRef50_Q553A1 Cluster: DNA-directed RNA polymerase; n=2;
Dictyostelium discoideum|Rep: DNA-directed RNA polymerase
- Dictyostelium discoideum AX4
Length = 1615
Score = 70.1 bits (164), Expect = 5e-11
Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAP 406
+VG L AQS+GEP+TQMTLNTFH AG NVTLG+PRL+E+I + KP P
Sbjct: 1139 SVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLRELIMTATTKPITP 1191
>UniRef50_Q7RJK4 Cluster: DNA-directed RNA polymerase; n=13;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
yoelii yoelii
Length = 2594
Score = 69.7 bits (163), Expect = 7e-11
Identities = 34/56 (60%), Positives = 41/56 (73%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 418
++G L AQS GEPATQMTLNTFH AG ++NVT+G+PRLKEI SK P + V
Sbjct: 1837 SIGILVAQSFGEPATQMTLNTFHLAG--TENVTMGIPRLKEIFLTSKLTSKPMIYV 1890
>UniRef50_Q69X40 Cluster: DNA-directed RNA polymerase; n=6; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 1748
Score = 69.3 bits (162), Expect = 9e-11
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII 379
VG +AAQS+GEP+TQMTLNTFH AG NVTLG+PRLKE++
Sbjct: 1206 VGVVAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLKELL 1247
>UniRef50_Q7R0K2 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 2142
Score = 67.7 bits (158), Expect = 3e-10
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 418
VG +AAQS GEP+TQ+TLNTFH AG N T+GVPRL+EII +++ +P +T+
Sbjct: 1617 VGVIAAQSTGEPSTQLTLNTFHLAGHGGVNATMGVPRLREII-MTRNTSSPIITM 1670
>UniRef50_Q8ZYQ7 Cluster: DNA-directed RNA polymerase subunit A'';
n=5; Thermoproteaceae|Rep: DNA-directed RNA polymerase
subunit A'' - Pyrobaculum aerophilum
Length = 379
Score = 66.9 bits (156), Expect = 5e-10
Identities = 29/80 (36%), Positives = 50/80 (62%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+G + AQS+GEP TQM L +FH+AG+ ++ G+PRL E+++ + P P + V+L
Sbjct: 57 IGIVTAQSIGEPGTQMILRSFHYAGLREFSMARGLPRLIEVVDARRTPSTPLMYVYLKPP 116
Query: 434 AARDAEKAKNVLCRLEHTTL 493
+ E A++V +++ TL
Sbjct: 117 YNKSREAAESVAKKIQQVTL 136
>UniRef50_Q8TXI9 Cluster: DNA-directed RNA polymerase largest
subunit, the N-terminal part; n=1; Methanopyrus
kandleri|Rep: DNA-directed RNA polymerase largest
subunit, the N-terminal part - Methanopyrus kandleri
Length = 429
Score = 65.3 bits (152), Expect = 2e-09
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINIS-KKPKAPSLTVFLTG 430
VG LAAQS+ EPATQMT+ TFH AGV+ ++T G+P L+ ++++ P + + L
Sbjct: 66 VGVLAAQSMCEPATQMTMRTFHLAGVAEIDITTGMPALERVLSLPYHGPPTWVIELRLKE 125
Query: 431 GAARDAEKAKNVLCRLEHTTLRKVT 505
D EKA+ V ++E T ++T
Sbjct: 126 PYRSDREKAEGVARKIEETRFEELT 150
>UniRef50_Q890N5 Cluster: DNA-directed RNA polymerase subunit beta';
n=3; Clostridium|Rep: DNA-directed RNA polymerase subunit
beta' - Clostridium tetani
Length = 1135
Score = 64.9 bits (151), Expect = 2e-09
Identities = 30/79 (37%), Positives = 49/79 (62%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
+VG +AAQS+GEP TQ+T+ TFH GV+ ++T G+PR++E+ ++KPK ++ + G
Sbjct: 895 SVGIIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFE-ARKPKGLAIVSEING 953
Query: 431 GAARDAEKAKNVLCRLEHT 487
D K K + + T
Sbjct: 954 TIRIDETKKKRTVVVIGET 972
>UniRef50_Q7T6X5 Cluster: DNA-directed RNA polymerase subunit 1; n=1;
Acanthamoeba polyphaga mimivirus|Rep: DNA-directed RNA
polymerase subunit 1 - Mimivirus
Length = 1495
Score = 64.1 bits (149), Expect = 4e-09
Identities = 35/83 (42%), Positives = 49/83 (59%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +AAQS+GEP TQ L +FH +G + K V+ G+ R+KE++ ISK K P + L
Sbjct: 1064 VGFVAAQSIGEPVTQTNLKSFHKSG-TGKTVSGGLVRVKELLGISKNIKTPITEIILEEK 1122
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
D A + L++TTLR V
Sbjct: 1123 YKNDKITASRIASYLKYTTLRDV 1145
>UniRef50_P16355 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=3; Trypanosoma brucei|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Trypanosoma brucei brucei
Length = 1744
Score = 63.3 bits (147), Expect = 6e-09
Identities = 33/72 (45%), Positives = 47/72 (65%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG LAAQ+ GEP+TQMTLNTFH AG + +VT G+PRL+E++ + KA ++ V +T
Sbjct: 1163 VGLLAAQAAGEPSTQMTLNTFHTAGSTVSHVTEGIPRLRELLIYASVNKA-AVVVPVTNA 1221
Query: 434 AARDAEKAKNVL 469
D + +L
Sbjct: 1222 TEEDEKVIAKML 1233
>UniRef50_Q58446 Cluster: DNA-directed RNA polymerase subunit A''
(EC 2.7.7.6) [Contains: Mja rpoA2 intein (Mja rpol A''
intein)]; n=7; Methanococcales|Rep: DNA-directed RNA
polymerase subunit A'' (EC 2.7.7.6) [Contains: Mja rpoA2
intein (Mja rpol A'' intein)] - Methanococcus jannaschii
Length = 859
Score = 62.9 bits (146), Expect = 8e-09
Identities = 28/70 (40%), Positives = 44/70 (62%)
Frame = +2
Query: 293 TQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLC 472
T T+ TFH+AGV+ NVTLG+PR+ EI++ K+P P +T++L + EKA+ +
Sbjct: 544 THNTMRTFHYAGVAEINVTLGLPRMIEIVDARKEPSTPIMTIYLKEEYKDNREKAEEIAK 603
Query: 473 RLEHTTLRKV 502
+E TL +
Sbjct: 604 EIESLTLGSI 613
>UniRef50_A5Z8Z4 Cluster: DNA-directed RNA polymerase; n=2;
Bacteria|Rep: DNA-directed RNA polymerase - Eubacterium
ventriosum ATCC 27560
Length = 1270
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/69 (43%), Positives = 46/69 (66%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +AAQS+GEP TQ+T+ TFH GV+ ++T G+PR++E+ ++KPK ++ + GG
Sbjct: 956 VGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFE-ARKPKGLAI-IAEFGG 1013
Query: 434 AARDAEKAK 460
A E K
Sbjct: 1014 VAEIKETKK 1022
>UniRef50_A4M8H7 Cluster: DNA-directed RNA polymerase; n=1; Petrotoga
mobilis SJ95|Rep: DNA-directed RNA polymerase - Petrotoga
mobilis SJ95
Length = 1643
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV-SSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG +AAQS+GEP TQ+T+ TFH G+ ++ ++T G+PR +E+ KK K P T
Sbjct: 1266 VGIIAAQSIGEPGTQLTMRTFHTGGIATTSDITQGLPRAEELFEARKKTKGPEGEFSKTK 1325
Query: 431 GAARDAEK 454
G R E+
Sbjct: 1326 GIVRAIER 1333
>UniRef50_Q18EX7 Cluster: DNA-directed RNA polymerase subunit A'';
n=1; Haloquadratum walsbyi DSM 16790|Rep: DNA-directed
RNA polymerase subunit A'' - Haloquadratum walsbyi
(strain DSM 16790)
Length = 637
Score = 61.7 bits (143), Expect = 2e-08
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +2
Query: 251 NVGALAAQSLGEPA-TQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLT 427
+V L + GE T T+NTFH+AGV+ +VT G+PRL E+++ K P P++TV+L
Sbjct: 284 SVSGLETFTTGEGVVTHNTMNTFHYAGVAEIDVTQGLPRLIELVDARKTPDTPTMTVYLE 343
Query: 428 GGAARDAEKAKNVLCRLEHTTL 493
A + +A V+ ++E T +
Sbjct: 344 EEYANERPRAHEVVWQMEATKI 365
>UniRef50_Q6YQW2 Cluster: DNA-directed RNA polymerase subunit beta';
n=4; Firmicutes|Rep: DNA-directed RNA polymerase subunit
beta' - Onion yellows phytoplasma
Length = 1353
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/60 (48%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV-SSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG +AAQS+GEP TQ+T+ TFH GV S+ ++T G+PR++E+ + +KPK +L L G
Sbjct: 1066 VGVIAAQSIGEPGTQLTMRTFHTGGVASASDITQGLPRIEELFEV-RKPKGKALISELKG 1124
>UniRef50_Q4D133 Cluster: DNA-directed RNA polymerase; n=7;
Trypanosomatidae|Rep: DNA-directed RNA polymerase -
Trypanosoma cruzi
Length = 1802
Score = 61.3 bits (142), Expect = 2e-08
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKA 403
VG LAAQ+ GEP+TQMTLNTFH AG + +VT G+PRL+E++ + KA
Sbjct: 1247 VGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELLIHASVQKA 1296
>UniRef50_Q4QEN2 Cluster: DNA-directed RNA polymerase I largest
subunit, putative; n=3; Leishmania|Rep: DNA-directed RNA
polymerase I largest subunit, putative - Leishmania major
Length = 1809
Score = 60.9 bits (141), Expect = 3e-08
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII 379
VG LAAQ+ GEP+TQMTLNTFH AG + +VT G+PRL+E++
Sbjct: 1232 VGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELL 1273
>UniRef50_Q8MUU2 Cluster: DNA-directed RNA polymerase; n=4; Giardia
intestinalis|Rep: DNA-directed RNA polymerase - Giardia
lamblia (Giardia intestinalis)
Length = 2076
Score = 59.7 bits (138), Expect = 8e-08
Identities = 31/57 (54%), Positives = 40/57 (70%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFL 424
VG LA S+ EPATQ+TLNTFH AG S+ LG+PRLKE+I+ + PK T++L
Sbjct: 1290 VGPLAGHSVSEPATQLTLNTFHTAGTSALG-GLGLPRLKELIDF-RNPKISVSTIYL 1344
>UniRef50_Q8R7U7 Cluster: DNA-directed RNA polymerase subunit beta';
n=22; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Thermoanaerobacter tengcongensis
Length = 1183
Score = 59.7 bits (138), Expect = 8e-08
Identities = 25/59 (42%), Positives = 43/59 (72%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG +AAQ++GEP TQ+T+ TFH GV+ ++T G+PR++E+ ++KPK ++ ++G
Sbjct: 894 VGIIAAQAIGEPGTQLTMRTFHTGGVAGVDITQGLPRVEELFE-ARKPKGLAVITEISG 951
>UniRef50_Q2RFP0 Cluster: DNA-directed RNA polymerase subunit beta';
n=12; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Moorella thermoacetica (strain ATCC 39073)
Length = 1164
Score = 59.7 bits (138), Expect = 8e-08
Identities = 26/59 (44%), Positives = 41/59 (69%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG +AAQS+GEP TQ+T+ TFH GV+ ++T G+ R++E+ ++KPK ++ TG
Sbjct: 877 VGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLSRVEELFE-ARKPKGQAIIAETTG 934
>UniRef50_Q3ZX00 Cluster: DNA-directed RNA polymerase subunit beta';
n=3; Dehalococcoides|Rep: DNA-directed RNA polymerase
subunit beta' - Dehalococcoides sp. (strain CBDB1)
Length = 1295
Score = 59.3 bits (137), Expect = 1e-07
Identities = 27/59 (45%), Positives = 40/59 (67%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG +AAQS+GEP TQ+TL TFH GV ++T G+PR++E+ ++ PK S+ + G
Sbjct: 941 VGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVEELFE-ARPPKVQSIISEIDG 998
>UniRef50_A7HNY1 Cluster: DNA-directed RNA polymerase, beta' subunit;
n=3; Bacteria|Rep: DNA-directed RNA polymerase, beta'
subunit - Fervidobacterium nodosum Rt17-B1
Length = 1650
Score = 58.8 bits (136), Expect = 1e-07
Identities = 25/53 (47%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGV-SSKNVTLGVPRLKEIINISKKPKAP 406
+VG +AAQS+GEP TQ+T+ TFH G+ ++ ++T G+PR++E+ KK K P
Sbjct: 1296 SVGIIAAQSIGEPGTQLTMRTFHTGGIATTADITQGLPRVEELFEARKKTKDP 1348
>UniRef50_A5USR6 Cluster: DNA-directed RNA polymerase; n=4;
Chloroflexaceae|Rep: DNA-directed RNA polymerase -
Roseiflexus sp. RS-1
Length = 1504
Score = 58.0 bits (134), Expect = 2e-07
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV-SSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG +AAQS+GEP TQ+TL TFH GV S+ ++T G+PR++EI ++ PK ++ + G
Sbjct: 1102 VGIIAAQSIGEPGTQLTLRTFHTGGVASADDITQGLPRVQEIFE-ARTPKGKAILAEIDG 1160
>UniRef50_Q97NQ8 Cluster: DNA-directed RNA polymerase subunit beta';
n=134; Firmicutes|Rep: DNA-directed RNA polymerase
subunit beta' - Streptococcus pneumoniae
Length = 1225
Score = 58.0 bits (134), Expect = 2e-07
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSK-NVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG +AAQS+GEP TQ+T+ TFH GV+S ++T G+PR++EI ++ PK ++ + G
Sbjct: 919 VGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEIFE-ARNPKGEAVITEVKG 977
Query: 431 GAARDAEKA 457
E A
Sbjct: 978 QVTAIEEDA 986
>UniRef50_Q9RVW0 Cluster: DNA-directed RNA polymerase subunit beta';
n=9; Deinococci|Rep: DNA-directed RNA polymerase subunit
beta' - Deinococcus radiodurans
Length = 1546
Score = 58.0 bits (134), Expect = 2e-07
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVS-SKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG +AA+S+GEP TQ+T+ TFH G++ ++T+G+PR+ E+ ++KPK ++ V
Sbjct: 1238 VGVVAAESIGEPGTQLTMRTFHTGGIAGGGDITMGLPRVIELFE-ARKPKTQAV-VADRD 1295
Query: 431 GAARDAEKAKNVLCRLE 481
G R E+ + L R+E
Sbjct: 1296 GVIRIEEEEERYLVRIE 1312
>UniRef50_Q82DQ4 Cluster: DNA-directed RNA polymerase subunit beta';
n=26; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Streptomyces avermitilis
Length = 1299
Score = 57.2 bits (132), Expect = 4e-07
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VG +AAQS+GEP TQ+T+ TFH GV+ ++T G+PR+ E+ ++ PK + +G
Sbjct: 989 VGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVVELFE-ARTPKGVAPISEASGR 1047
Query: 434 A-ARDAEKAKNVL 469
+ EK K ++
Sbjct: 1048 VRIEETEKTKKIV 1060
>UniRef50_P95405 Cluster: DNA-directed RNA polymerase subunit beta';
n=23; Lactobacillales|Rep: DNA-directed RNA polymerase
subunit beta' - Oenococcus oeni (Leuconostoc oenos)
Length = 1004
Score = 57.2 bits (132), Expect = 4e-07
Identities = 28/60 (46%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVS-SKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG +AAQS+GEP TQ+T+ TFH GV+ S+++T G+PR++EI ++ PK + +TG
Sbjct: 858 VGTVAAQSIGEPGTQLTMRTFHTGGVALSEDITQGLPRVQEIFE-ARNPKGRAEISEVTG 916
>UniRef50_Q6F0L8 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Mollicutes|Rep: DNA-directed RNA polymerase subunit
beta' - Mesoplasma florum (Acholeplasma florum)
Length = 1254
Score = 57.2 bits (132), Expect = 4e-07
Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +2
Query: 212 RGKIPASTSKSR*NVGALAAQSLGEPATQMTLNTFHFAGVS-SKNVTLGVPRLKEIINIS 388
R AS K VG +AAQS+GEP TQ+T+ TFH GV+ ++T G+PR+KE+++++
Sbjct: 959 RNLATASLVKIGEPVGVIAAQSIGEPGTQLTMRTFHTGGVAGDADITQGLPRIKELLDVT 1018
>UniRef50_Q91FI1 Cluster: 343L; n=1; Invertebrate iridescent virus
6|Rep: 343L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 462
Score = 56.8 bits (131), Expect = 5e-07
Identities = 28/56 (50%), Positives = 40/56 (71%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 421
VG + AQS+GE +TQ TLNTFH AGV + + T GV R +++IN SK K ++++F
Sbjct: 82 VGIIGAQSMGEYSTQATLNTFHVAGVDTGSST-GVSRFQDLINASKTVKIDNISLF 136
>UniRef50_Q9AW39 Cluster: DNA-directed RNA polymerase; n=1; Guillardia
theta|Rep: DNA-directed RNA polymerase - Guillardia theta
(Cryptomonas phi)
Length = 1434
Score = 56.8 bits (131), Expect = 5e-07
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKK 394
+ G L Q++GEP TQMTLNTFH+AG S + G+PRLKE++ + K
Sbjct: 1088 STGILCGQAIGEPCTQMTLNTFHYAGKISSHGKQGLPRLKEMLLYNSK 1135
>UniRef50_Q0LJX1 Cluster: DNA-directed RNA polymerase, subunit
beta-prime; n=2; cellular organisms|Rep: DNA-directed RNA
polymerase, subunit beta-prime - Herpetosiphon
aurantiacus ATCC 23779
Length = 1543
Score = 56.0 bits (129), Expect = 9e-07
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSS-KNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG +AAQS+GEP TQ+TL TFH GV++ ++T G+PR++EI ++ PK ++ + G
Sbjct: 1124 VGIIAAQSIGEPGTQLTLRTFHTGGVATDTDITQGLPRVQEIFE-ARIPKGKAVLAQIAG 1182
>UniRef50_Q9PQV5 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Ureaplasma parvum|Rep: DNA-directed RNA polymerase
subunit beta' - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 1305
Score = 53.6 bits (123), Expect = 5e-06
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVS-SKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
+G +AAQS+GEP TQ+T+ TFH GV+ N+T G R+K++ + + + +
Sbjct: 1024 IGVIAAQSIGEPGTQLTMRTFHTGGVAGDTNITQGFERIKQLFDCIQPQENEKAVISQVK 1083
Query: 431 GAARDAEKAKN 463
G EK N
Sbjct: 1084 GTVERIEKDSN 1094
>UniRef50_Q196X0 Cluster: DNA-directed RNA polymerase; n=1; Aedes
taeniorhynchus iridescent virus|Rep: DNA-directed RNA
polymerase - Aedes taeniorhynchus iridescent virus
Length = 1377
Score = 53.2 bits (122), Expect = 7e-06
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKN-VTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG + AQS+GE +TQ TLNTFH AG ++ VT + R +EI N +K PK + V+ T
Sbjct: 991 VGIIGAQSMGEFSTQATLNTFHVAGSTTTGAVTNCLTRFQEINNATKNPKNITCKVYFTK 1050
Query: 431 G 433
G
Sbjct: 1051 G 1051
>UniRef50_Q4A5S8 Cluster: DNA-directed RNA polymerase subunit beta';
n=2; Mycoplasma|Rep: DNA-directed RNA polymerase subunit
beta' - Mycoplasma synoviae (strain 53)
Length = 1492
Score = 53.2 bits (122), Expect = 7e-06
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVS-SKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG +AAQS+GEP TQ+T+ TFH GV+ +++T G RL E+I+ +P +
Sbjct: 1134 VGVIAAQSIGEPGTQLTMRTFHTGGVAGGEDITGGFGRLIELIDAYDQPWGTPAEISRHY 1193
Query: 431 GAARDAEKAKN 463
G + E KN
Sbjct: 1194 GKVKKIETQKN 1204
>UniRef50_P47582 Cluster: DNA-directed RNA polymerase subunit beta';
n=8; Mycoplasma|Rep: DNA-directed RNA polymerase subunit
beta' - Mycoplasma genitalium
Length = 1292
Score = 53.2 bits (122), Expect = 7e-06
Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSK-NVTLGVPRLKEIINI 385
VG +AAQS+GEP TQ+T+ TFH GVS++ N+ G RLK+I +
Sbjct: 1014 VGVIAAQSIGEPGTQLTMRTFHTGGVSTENNLAQGFERLKQIFEV 1058
>UniRef50_Q3LWH2 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1359
Score = 52.0 bits (119), Expect = 2e-05
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII 379
+G L QS+GEP TQMTLNTFH G+ ++ V G+P L +++
Sbjct: 1019 LGVLCGQSIGEPLTQMTLNTFHNTGIVNEGVNRGIPYLVQLV 1060
>UniRef50_Q8G515 Cluster: DNA-directed RNA polymerase subunit beta';
n=68; Actinobacteridae|Rep: DNA-directed RNA polymerase
subunit beta' - Bifidobacterium longum
Length = 1345
Score = 51.6 bits (118), Expect = 2e-05
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV-SSKNVTLGVPRLKEIINISKKPK 400
VG +AAQS+GEP TQ+TL +FH GV ++ ++T G+PR+ E+ ++ PK
Sbjct: 1001 VGIVAAQSIGEPGTQLTLRSFHSGGVAAASDITQGLPRVTELFE-ARTPK 1049
>UniRef50_Q98Q24 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Mycoplasma|Rep: DNA-directed RNA polymerase subunit
beta' - Mycoplasma pulmonis
Length = 1426
Score = 50.0 bits (114), Expect = 6e-05
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSS-KNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG A+QS+GEP TQ+T+ TFH GV+ +++T G RL E+I+ + P +
Sbjct: 1112 VGITASQSIGEPGTQLTMRTFHSGGVAGVEDITGGFGRLTELIDAYRSPWGRPAIISKVD 1171
Query: 431 GAARDAEKAKNVLCRLEHTT 490
G + + K+ L + T
Sbjct: 1172 GIITEIKTPKDKNTNLVYIT 1191
>UniRef50_Q3LWD4 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1329
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINIS 388
+G +A QS+ EP TQMTL +FHF G KN++ ++K I S
Sbjct: 1007 IGIIAGQSISEPVTQMTLKSFHFTGHHHKNISKEFQKIKNIFRYS 1051
>UniRef50_Q2N0X2 Cluster: RNA polymerase III large subunit; n=1;
Monosiga brevicollis|Rep: RNA polymerase III large
subunit - Monosiga brevicollis
Length = 233
Score = 46.8 bits (106), Expect = 6e-04
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +2
Query: 329 VSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKV 502
V++ NVTLGVPR+KEIIN +K P +T L R+ A+ V RLE TL +V
Sbjct: 1 VAAMNVTLGVPRIKEIINAAKNISTPVITAKLEND--REESFARQVKARLETLTLGEV 56
>UniRef50_Q73JJ8 Cluster: DNA-directed RNA polymerase subunit beta';
n=10; Spirochaetales|Rep: DNA-directed RNA polymerase
subunit beta' - Treponema denticola
Length = 1424
Score = 46.8 bits (106), Expect = 6e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +AAQS+G+P TQ+T+ TFH G +SKNV
Sbjct: 884 VGIIAAQSIGQPGTQLTMRTFHEGGTASKNV 914
>UniRef50_Q06J19 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1595
Score = 46.4 bits (105), Expect = 8e-04
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +AAQS+GEP TQ+T+ TFH GV S NV
Sbjct: 314 VGVIAAQSIGEPGTQLTMRTFHTGGVFSGNV 344
>UniRef50_A4E9H2 Cluster: DNA-directed RNA polymerase; n=1;
Collinsella aerofaciens ATCC 25986|Rep: DNA-directed RNA
polymerase - Collinsella aerofaciens ATCC 25986
Length = 1373
Score = 46.0 bits (104), Expect = 0.001
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSS-KNVTLGVPRLKEIINI 385
VG +AAQS+GEP TQ+T+ T H GV+ ++T G+P + + +I
Sbjct: 873 VGIIAAQSIGEPGTQLTMRTIHSGGVAGVDDITQGLPTVSRMFDI 917
>UniRef50_Q7MX26 Cluster: DNA-directed RNA polymerase subunit beta';
n=35; root|Rep: DNA-directed RNA polymerase subunit beta'
- Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 1433
Score = 46.0 bits (104), Expect = 0.001
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVT 349
VG +AAQS+GEP TQ+TL TFH G++S T
Sbjct: 916 VGVIAAQSIGEPGTQLTLRTFHVGGIASNVAT 947
>UniRef50_Q7VJ82 Cluster: Bifunctional DNA-directed RNA polymerase
subunit beta-beta' (EC 2.7.7.6) [Includes: DNA-directed
RNA polymerase subunit beta (Transcriptase subunit beta)
(RNA polymerase subunit beta); DNA- directed RNA
polymerase subunit beta' (Transcriptase subunit beta')
(RNA polymerase beta')]; n=246; cellular organisms|Rep:
Bifunctional DNA-directed RNA polymerase subunit
beta-beta' (EC 2.7.7.6) [Includes: DNA-directed RNA
polymerase subunit beta (Transcriptase subunit beta) (RNA
polymerase subunit beta); DNA- directed RNA polymerase
subunit beta' (Transcriptase subunit beta') (RNA
polymerase beta')] - Helicobacter hepaticus
Length = 2894
Score = 46.0 bits (104), Expect = 0.001
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKN 343
VG LAAQS+GEP TQ+TL TFH G +S++
Sbjct: 2280 VGVLAAQSIGEPGTQLTLRTFHVGGTASRS 2309
>UniRef50_Q3ZJ90 Cluster: DNA-directed RNA polymerase subunit
beta''; n=3; Viridiplantae|Rep: DNA-directed RNA
polymerase subunit beta'' - Pseudendoclonium akinetum
(Green alga)
Length = 3462
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVT 349
+G +AAQS+GEP TQ+T+ TFH GV S VT
Sbjct: 362 IGIIAAQSIGEPGTQLTMRTFHTGGVFSGEVT 393
>UniRef50_Q7VA30 Cluster: DNA-directed RNA polymerase subunit beta';
n=33; root|Rep: DNA-directed RNA polymerase subunit
beta' - Prochlorococcus marinus
Length = 1367
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKA 403
VG +AAQS+GEP TQ+T+ TFH GVS+ GV R + PKA
Sbjct: 344 VGIIAAQSIGEPGTQLTMRTFHTGGVSTAET--GVVRSNLAGKVEFGPKA 391
>UniRef50_Q19VA0 Cluster: DNA-directed RNA polymerase; n=1;
Chlorokybus atmophyticus|Rep: DNA-directed RNA
polymerase - Chlorokybus atmophyticus (Soil alga)
Length = 1396
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +AAQS+GEP TQ+T+ TFH GV + NV
Sbjct: 317 VGIIAAQSIGEPGTQLTMRTFHTGGVFTGNV 347
>UniRef50_A6YGE2 Cluster: DNA-directed RNA polymerase; n=1;
Leptosira terrestris|Rep: DNA-directed RNA polymerase -
Leptosira terrestris (Pleurastrum terrestre)
Length = 3576
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGV 358
VG +AAQS+GEP TQ+T+ TFH GV S ++ G+
Sbjct: 386 VGIIAAQSIGEPGTQLTMRTFHTGGVFSGDILEGL 420
>UniRef50_Q7PCJ6 Cluster: DNA-directed RNA polymerase subunit
beta''; n=4; Eukaryota|Rep: DNA-directed RNA polymerase
subunit beta'' - Chlamydomonas reinhardtii
Length = 3120
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVT 349
VG +AAQS+GEP TQ+T+ TFH GV S +V+
Sbjct: 423 VGVIAAQSIGEPGTQLTMRTFHTGGVFSGDVS 454
>UniRef50_Q8KTP7 Cluster: DNA-directed RNA polymerase; n=1;
Candidatus Tremblaya princeps|Rep: DNA-directed RNA
polymerase - Tremblaya princeps
Length = 1319
Score = 44.4 bits (100), Expect = 0.003
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSS 337
VG +AAQS+GEP TQ+T+ TFH G++S
Sbjct: 903 VGVVAAQSIGEPGTQLTMRTFHIGGIAS 930
>UniRef50_Q9Z999 Cluster: DNA-directed RNA polymerase subunit beta';
n=47; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Chlamydia pneumoniae (Chlamydophila pneumoniae)
Length = 1393
Score = 44.4 bits (100), Expect = 0.003
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVT 349
VG +AAQS+GEP TQ+T+ TFH G+++ + T
Sbjct: 914 VGIIAAQSIGEPGTQLTMRTFHLGGIAATSST 945
>UniRef50_Q39KH4 Cluster: DNA-directed RNA polymerase subunit beta';
n=45; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta' - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 1414
Score = 44.4 bits (100), Expect = 0.003
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSK 340
VG +AAQS+GEP TQ+T+ TFH G +S+
Sbjct: 920 VGVIAAQSIGEPGTQLTMRTFHIGGAASR 948
>UniRef50_Q9TL04 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Nephroselmis olivacea|Rep: DNA-directed RNA
polymerase subunit beta'' - Nephroselmis olivacea
Length = 1463
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVT 349
VG +AAQS+GEP TQ+T+ TFH GV + VT
Sbjct: 339 VGIIAAQSIGEPGTQLTMRTFHTGGVFAGGVT 370
>UniRef50_Q9MUS7 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Eukaryota|Rep: DNA-directed RNA polymerase
subunit beta'' - Mesostigma viride
Length = 1223
Score = 44.4 bits (100), Expect = 0.003
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +AAQS+GEP TQ+T+ TFH GV + N+
Sbjct: 334 VGIIAAQSIGEPGTQLTMRTFHTGGVFTGNI 364
>UniRef50_Q4G3A5 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Emiliania huxleyi|Rep: DNA-directed RNA
polymerase subunit beta'' - Emiliania huxleyi
Length = 1267
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVT 349
VG +AAQS+GEP TQ+T+ TFH GV S ++T
Sbjct: 317 VGIVAAQSIGEPGTQLTMRTFHTGGVFSGDLT 348
>UniRef50_Q20EX3 Cluster: DNA-directed RNA polymerase; n=1;
Oltmannsiellopsis viridis|Rep: DNA-directed RNA
polymerase - Oltmannsiellopsis viridis (Marine
flagellate)
Length = 1859
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +AAQS+GEP TQ+T+ TFH GV S +V
Sbjct: 386 VGVVAAQSIGEPGTQLTMRTFHTGGVFSGDV 416
>UniRef50_Q0P3M4 Cluster: DNA-directed RNA polymerase; n=1;
Ostreococcus tauri|Rep: DNA-directed RNA polymerase -
Ostreococcus tauri
Length = 1011
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVT 349
VG LAAQS+GEP TQ+T+ TFH GV + T
Sbjct: 308 VGVLAAQSIGEPGTQLTMRTFHTGGVFAGEAT 339
>UniRef50_Q7VRP8 Cluster: DNA-directed RNA polymerase subunit beta';
n=16; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta' - Blochmannia floridanus
Length = 1420
Score = 44.0 bits (99), Expect = 0.004
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSK 340
+G +AAQS+GEP TQ+T+ TFH G +S+
Sbjct: 923 IGVIAAQSIGEPGTQLTMRTFHIGGAASR 951
>UniRef50_Q83066 Cluster: DNA-directed RNA polymerase; n=3;
Lymphocystivirus|Rep: DNA-directed RNA polymerase - Fish
lymphocystis disease virus (FLDV)
Length = 1199
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 409
VG + AQ++G TQ TLNTFH AG S+ G + EI+++++KPK S
Sbjct: 869 VGIICAQAIGAKQTQQTLNTFHKAGTLSE---AGHRQFGEILSLTQKPKKRS 917
>UniRef50_Q06VH1 Cluster: RNA polymerase II; n=1; Trichoplusia ni
ascovirus 2c|Rep: RNA polymerase II - Trichoplusia ni
ascovirus 2c
Length = 453
Score = 43.6 bits (98), Expect = 0.005
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 391
VG AQS+GE TQ TLNTFH AG+ + +T + ++++IIN+ K
Sbjct: 74 VGIACAQSIGECITQSTLNTFHAAGMDTGIMTT-MRKIEDIINLPK 118
>UniRef50_Q1KVX8 Cluster: DNA-directed RNA polymerase; n=1;
Scenedesmus obliquus|Rep: DNA-directed RNA polymerase -
Scenedesmus obliquus
Length = 2552
Score = 43.6 bits (98), Expect = 0.005
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVT 349
VG +AAQS+GEP TQ+T+ TFH GV + +T
Sbjct: 441 VGVIAAQSIGEPGTQLTMRTFHTGGVFAGGLT 472
>UniRef50_Q9CK92 Cluster: DNA-directed RNA polymerase subunit beta';
n=86; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Pasteurella multocida
Length = 1417
Score = 43.6 bits (98), Expect = 0.005
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSS 337
VG +AAQS+GEP TQ+T+ TFH G +S
Sbjct: 916 VGVIAAQSIGEPGTQLTMRTFHIGGAAS 943
>UniRef50_Q7VKL8 Cluster: DNA-directed RNA polymerase subunit beta';
n=685; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Haemophilus ducreyi
Length = 1420
Score = 43.6 bits (98), Expect = 0.005
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSS 337
VG +AAQS+GEP TQ+T+ TFH G +S
Sbjct: 916 VGVIAAQSIGEPGTQLTMRTFHIGGAAS 943
>UniRef50_P23581 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Euglena|Rep: DNA-directed RNA polymerase
subunit beta'' - Euglena gracilis
Length = 830
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSS 337
VG LAAQS+GEP TQ+T+ TFH GV S
Sbjct: 318 VGILAAQSIGEPGTQLTMRTFHTGGVFS 345
>UniRef50_Q9AIH0 Cluster: DNA-directed RNA polymerase; n=17;
Candidatus Carsonella ruddii|Rep: DNA-directed RNA
polymerase - Carsonella ruddii
Length = 1292
Score = 43.2 bits (97), Expect = 0.007
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSS 337
+VG ++AQS+GEP TQ+T+ TFH GV+S
Sbjct: 842 SVGIISAQSIGEPGTQLTMRTFHTGGVAS 870
>UniRef50_A3ZLH7 Cluster: DNA-directed RNA polymerase; n=2;
Planctomycetaceae|Rep: DNA-directed RNA polymerase -
Blastopirellula marina DSM 3645
Length = 1478
Score = 43.2 bits (97), Expect = 0.007
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVS 334
VG +AAQS+GEP TQ+T+ TFH GV+
Sbjct: 905 VGIIAAQSIGEPGTQLTMRTFHIGGVA 931
>UniRef50_Q5FTX8 Cluster: DNA-directed RNA polymerase subunit beta';
n=224; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 1439
Score = 43.2 bits (97), Expect = 0.007
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSK 340
VG +AAQS+GEP TQ+T+ TFH G +++
Sbjct: 963 VGVIAAQSIGEPGTQLTMRTFHIGGAATR 991
>UniRef50_Q1ACN4 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Chara vulgaris|Rep: DNA-directed RNA
polymerase subunit beta'' - Chara vulgaris (Common
stonewort)
Length = 1412
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +AAQS+GEP TQ+TL TFH GV + ++
Sbjct: 321 VGIIAAQSIGEPGTQLTLRTFHTGGVFTGDI 351
>UniRef50_A6DPM8 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Lentisphaera araneosa HTCC2155|Rep: DNA-directed RNA
polymerase subunit beta' - Lentisphaera araneosa HTCC2155
Length = 1423
Score = 42.7 bits (96), Expect = 0.009
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSS 337
VG +AAQS+GEP TQ+T+ TFH G +S
Sbjct: 948 VGIIAAQSIGEPGTQLTMRTFHVGGTAS 975
>UniRef50_Q2W2I2 Cluster: DNA-directed RNA polymerase subunit beta';
n=4; Proteobacteria|Rep: DNA-directed RNA polymerase
subunit beta' - Magnetospirillum magneticum (strain AMB-1
/ ATCC 700264)
Length = 1496
Score = 42.7 bits (96), Expect = 0.009
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSK 340
VG +AAQS+GEP TQ+T+ TFH G + +
Sbjct: 1009 VGVIAAQSIGEPGTQLTMRTFHIGGAAQR 1037
>UniRef50_P49468 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Odontella sinensis|Rep: DNA-directed RNA
polymerase subunit beta'' - Odontella sinensis (Marine
centric diatom)
Length = 1481
Score = 42.7 bits (96), Expect = 0.009
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV--TLGVPRLKEIINISKKPK 400
+G +A QS+GEP TQ+T+ TFH G+ + + T+ P + I+ SK+ K
Sbjct: 318 IGIIAGQSIGEPGTQLTMRTFHTGGIFTSEIRGTIRSP-ISGIVKFSKRLK 367
>UniRef50_P48120 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Cyanophora paradoxa|Rep: DNA-directed RNA
polymerase subunit beta'' - Cyanophora paradoxa
Length = 1265
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +AAQS+GEP TQ+T+ TFH GV + V
Sbjct: 324 VGIIAAQSIGEPGTQLTMRTFHTGGVFTAEV 354
>UniRef50_Q2EEX0 Cluster: DNA-directed RNA polymerase; n=1;
Helicosporidium sp. ex Simulium jonesii|Rep:
DNA-directed RNA polymerase - Helicosporidium sp. subsp.
Simulium jonesii (Green alga)
Length = 1058
Score = 42.3 bits (95), Expect = 0.012
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
+G +AAQS+GEP TQ+TL TFH GV
Sbjct: 331 IGIIAAQSIGEPGTQLTLRTFHTGGV 356
>UniRef50_P36252 Cluster: DNA-directed RNA polymerase subunit beta';
n=2; Thermotoga|Rep: DNA-directed RNA polymerase subunit
beta' - Thermotoga maritima
Length = 1690
Score = 42.3 bits (95), Expect = 0.012
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
VG +AAQS+GEP TQ+T+ TFH GV
Sbjct: 1322 VGVVAAQSIGEPGTQLTMRTFHVGGV 1347
>UniRef50_Q8RHI7 Cluster: DNA-directed RNA polymerase subunit beta';
n=4; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Fusobacterium nucleatum subsp. nucleatum
Length = 1319
Score = 42.3 bits (95), Expect = 0.012
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVS 334
VG +AAQS+GEP TQ+T+ TFH GV+
Sbjct: 873 VGVVAAQSIGEPGTQLTMRTFHTGGVA 899
>UniRef50_P22705 Cluster: DNA-directed RNA polymerase subunit beta';
n=7; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta' - Anabaena sp. (strain PCC 7120)
Length = 1355
Score = 42.3 bits (95), Expect = 0.012
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +AAQS+GEP TQ+T+ TFH GV + V
Sbjct: 320 VGIIAAQSIGEPGTQLTMRTFHTGGVFTGEV 350
>UniRef50_Q110H3 Cluster: DNA-directed RNA polymerase, beta''
subunit; n=2; Oscillatoriales|Rep: DNA-directed RNA
polymerase, beta'' subunit - Trichodesmium erythraeum
(strain IMS101)
Length = 1415
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
+G +AAQS+GEP TQ+T+ TFH GV + V
Sbjct: 321 IGIIAAQSIGEPGTQLTMRTFHTGGVFTGEV 351
>UniRef50_A6PR79 Cluster: DNA-directed RNA polymerase, beta'
subunit; n=1; Victivallis vadensis ATCC BAA-548|Rep:
DNA-directed RNA polymerase, beta' subunit - Victivallis
vadensis ATCC BAA-548
Length = 1464
Score = 41.9 bits (94), Expect = 0.016
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSS 337
+G +AAQS+GEP TQ+T+ TFH G +S
Sbjct: 907 LGIIAAQSIGEPGTQLTMRTFHIGGTAS 934
>UniRef50_Q06SF2 Cluster: DNA-directed RNA polymerase; n=1;
Stigeoclonium helveticum|Rep: DNA-directed RNA
polymerase - Stigeoclonium helveticum (Green alga)
Length = 2430
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
VG +AAQS+GEP TQ+T+ TFH GV
Sbjct: 482 VGIIAAQSIGEPGTQLTMRTFHTGGV 507
>UniRef50_Q8KG14 Cluster: DNA-directed RNA polymerase subunit beta';
n=11; Chlorobiaceae|Rep: DNA-directed RNA polymerase
subunit beta' - Chlorobium tepidum
Length = 1490
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +AAQS+GEP TQ+TL TFH G + +
Sbjct: 971 VGVIAAQSIGEPGTQLTLRTFHQGGAAQGGI 1001
>UniRef50_O67763 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Aquificaceae|Rep: DNA-directed RNA polymerase
subunit beta' - Aquifex aeolicus
Length = 1574
Score = 41.9 bits (94), Expect = 0.016
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSS 337
VG +AAQS+GEP TQ+T+ TFH G ++
Sbjct: 1029 VGIIAAQSIGEPGTQLTMRTFHIGGAAT 1056
>UniRef50_A0T0Q9 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Thalassiosira pseudonana|Rep: DNA-directed
RNA polymerase subunit beta'' - Thalassiosira pseudonana
(Marine diatom)
Length = 1446
Score = 41.9 bits (94), Expect = 0.016
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKE-IINISKKPKAPSLTVFLTG 430
VG LA QS+GEP TQ+T+ TFH G+ + + K II SK K T+ L
Sbjct: 312 VGILAGQSIGEPGTQLTMRTFHTGGIFTSEARQQIISPKNGIIKFSKILK----TIILRT 367
Query: 431 GAARDAEKAKN 463
D KN
Sbjct: 368 NRGEDVLLTKN 378
>UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Cryptomonadaceae|Rep: DNA-directed RNA
polymerase subunit beta'' - Guillardia theta
(Cryptomonas phi)
Length = 1286
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
VG +AAQS+GEP TQ+T+ TFH GV
Sbjct: 326 VGIIAAQSIGEPGTQLTMRTFHTGGV 351
>UniRef50_Q6B8R6 Cluster: DNA-directed RNA polymerase subunit
beta''; n=3; Rhodophyta|Rep: DNA-directed RNA polymerase
subunit beta'' - Gracilaria tenuistipitata var. liui
(Red alga)
Length = 1228
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
VG +AAQS+GEP TQ+T+ TFH GV
Sbjct: 323 VGIIAAQSIGEPGTQLTMRTFHTGGV 348
>UniRef50_Q9TM34 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Cyanidium caldarium|Rep: DNA-directed RNA
polymerase subunit beta'' - Cyanidium caldarium
Length = 1269
Score = 41.9 bits (94), Expect = 0.016
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKE 373
+G +AAQS+GEP TQ+T+ TFH GV + + + L E
Sbjct: 328 IGIIAAQSIGEPGTQLTMRTFHTGGVFTAEFSKPIKTLFE 367
>UniRef50_P12465 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Chlorella vulgaris|Rep: DNA-directed RNA
polymerase subunit beta'' - Chlorella vulgaris (Green
alga)
Length = 1562
Score = 41.9 bits (94), Expect = 0.016
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
VG +AAQS+GEP TQ+T+ TFH GV
Sbjct: 365 VGIIAAQSIGEPGTQLTMRTFHTGGV 390
>UniRef50_A7QYV9 Cluster: Chromosome chr6 scaffold_256, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr6 scaffold_256, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 338
Score = 41.5 bits (93), Expect = 0.022
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
VG +A QS+GEP TQ+TL TFH +GV
Sbjct: 150 VGIIAGQSIGEPGTQLTLRTFHTSGV 175
>UniRef50_Q2LQ86 Cluster: DNA-directed RNA polymerase subunit beta';
n=6; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Syntrophus aciditrophicus (strain SB)
Length = 1381
Score = 41.5 bits (93), Expect = 0.022
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVS 334
VG +AAQS+GEP TQ+T+ TFH G +
Sbjct: 902 VGIIAAQSIGEPGTQLTMRTFHIGGTA 928
>UniRef50_Q32RG2 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Zygnema circumcarinatum|Rep: DNA-directed
RNA polymerase subunit beta'' - Zygnema circumcarinatum
(Green alga)
Length = 1095
Score = 41.5 bits (93), Expect = 0.022
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +2
Query: 182 CSI*MAYRGNRGKIPASTSKSR*NVGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
C + + N+GK+ S ++ +G +A QS+GEP TQ+TL TFH GV + ++
Sbjct: 300 CQLCYGWGVNQGKM-VSLGEA---IGVVAGQSIGEPGTQLTLRTFHTGGVFTGDI 350
>UniRef50_Q8WI26 Cluster: DNA-directed RNA polymerase subunit
beta''; n=3; Moniliformopses|Rep: DNA-directed RNA
polymerase subunit beta'' - Psilotum nudum (Whisk fern)
Length = 1408
Score = 41.5 bits (93), Expect = 0.022
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +A QS+GEP TQ+TL TFH GV + ++
Sbjct: 319 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGDI 349
>UniRef50_P41606 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Pinus|Rep: DNA-directed RNA polymerase
subunit beta'' - Pinus thunbergii (Green pine) (Japanese
black pine)
Length = 1224
Score = 41.5 bits (93), Expect = 0.022
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +A QS+GEP TQ+TL TFH GV + ++
Sbjct: 335 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGDI 365
>UniRef50_P60290 Cluster: DNA-directed RNA polymerase subunit
beta''; n=3; Physcomitrella patens|Rep: DNA-directed RNA
polymerase subunit beta'' - Physcomitrella patens (Moss)
Length = 1330
Score = 41.5 bits (93), Expect = 0.022
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +A QS+GEP TQ+TL TFH GV + ++
Sbjct: 309 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGDI 339
>UniRef50_P06274 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Marchantia polymorpha|Rep: DNA-directed RNA
polymerase subunit beta'' - Marchantia polymorpha
(Liverwort)
Length = 1386
Score = 41.5 bits (93), Expect = 0.022
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +A QS+GEP TQ+TL TFH GV + ++
Sbjct: 316 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGDI 346
>UniRef50_Q8MA10 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; cellular organisms|Rep: DNA-directed RNA
polymerase subunit beta'' - Chaetosphaeridium globosum
Length = 1373
Score = 41.5 bits (93), Expect = 0.022
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +A QS+GEP TQ+TL TFH GV + ++
Sbjct: 320 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGDI 350
>UniRef50_Q85C71 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Anthoceros|Rep: DNA-directed RNA polymerase
subunit beta'' - Anthoceros formosae (Hornwort)
Length = 1445
Score = 41.5 bits (93), Expect = 0.022
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +A QS+GEP TQ+TL TFH GV + ++
Sbjct: 321 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGDI 351
>UniRef50_Q85FM9 Cluster: DNA-directed RNA polymerase subunit
beta''; n=2; Adiantum capillus-veneris|Rep: DNA-directed
RNA polymerase subunit beta'' - Adiantum
capillus-veneris (Maidenhair fern)
Length = 1420
Score = 41.5 bits (93), Expect = 0.022
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG +A QS+GEP TQ+TL TFH GV + ++
Sbjct: 322 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGDI 352
>UniRef50_Q0E534 Cluster: 52.2 kDa DNA-directed RNA polymerase II
subunit 1; n=2; Ascovirus|Rep: 52.2 kDa DNA-directed RNA
polymerase II subunit 1 - Spodoptera frugiperda
ascovirus 1a
Length = 462
Score = 41.1 bits (92), Expect = 0.029
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 391
VG AQ +GE TQ TLNTFH AG+ + + + ++++IIN+ K
Sbjct: 80 VGVACAQFIGECITQSTLNTFHAAGMDT-GIVSTMRKIEDIINLPK 124
>UniRef50_Q5SCY0 Cluster: DNA-directed RNA polymerase; n=2;
Embryophyta|Rep: DNA-directed RNA polymerase - Huperzia
lucidula (Shining clubmoss) (Lycopodium lucidulum)
Length = 1788
Score = 41.1 bits (92), Expect = 0.029
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
VG +A QS+GEP TQ+TL TFH GV
Sbjct: 337 VGIIAGQSIGEPGTQLTLRTFHTGGV 362
>UniRef50_A7P7C3 Cluster: Chromosome chr9 scaffold_7, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr9 scaffold_7, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 692
Score = 41.1 bits (92), Expect = 0.029
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
VG +A QS+GEP TQ+TL TFH GV
Sbjct: 625 VGIIAGQSIGEPGTQLTLRTFHTGGV 650
>UniRef50_P16025 Cluster: DNA-directed RNA polymerase subunit
beta''; n=372; Spermatophyta|Rep: DNA-directed RNA
polymerase subunit beta'' - Zea mays (Maize)
Length = 1527
Score = 41.1 bits (92), Expect = 0.029
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
VG +A QS+GEP TQ+TL TFH GV
Sbjct: 323 VGIIAGQSIGEPGTQLTLRTFHTGGV 348
>UniRef50_P56764 Cluster: DNA-directed RNA polymerase subunit
beta''; n=126; Eukaryota|Rep: DNA-directed RNA
polymerase subunit beta'' - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1376
Score = 41.1 bits (92), Expect = 0.029
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
VG +A QS+GEP TQ+TL TFH GV
Sbjct: 320 VGIIAGQSIGEPGTQLTLRTFHTGGV 345
>UniRef50_P60289 Cluster: DNA-directed RNA polymerase subunit
beta''; n=24; Spermatophyta|Rep: DNA-directed RNA
polymerase subunit beta'' - Amborella trichopoda
Length = 1373
Score = 41.1 bits (92), Expect = 0.029
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
VG +A QS+GEP TQ+TL TFH GV
Sbjct: 323 VGIIAGQSIGEPGTQLTLRTFHTGGV 348
>UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria
tenella|Rep: RNA polymerase C2 - Eimeria tenella
Length = 1050
Score = 40.7 bits (91), Expect = 0.038
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
NVG L+ Q +GEP TQ+TL TFH G + N+
Sbjct: 308 NVGILSGQVIGEPGTQLTLRTFHTGGTFTLNL 339
>UniRef50_Q32RY2 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Staurastrum punctulatum|Rep: DNA-directed
RNA polymerase subunit beta'' - Staurastrum punctulatum
(Green alga)
Length = 1250
Score = 40.7 bits (91), Expect = 0.038
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
+G +A QS+GEP TQ+TL TFH GV + V
Sbjct: 341 IGIVAGQSIGEPGTQLTLRTFHTGGVFTGGV 371
>UniRef50_A0T0D9 Cluster: DNA-directed RNA polymerase subunit
beta''; n=1; Phaeodactylum tricornutum|Rep: DNA-directed
RNA polymerase subunit beta'' - Phaeodactylum
tricornutum
Length = 1415
Score = 40.3 bits (90), Expect = 0.050
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGV 331
+G LA QS+GEP TQ+T+ TFH G+
Sbjct: 318 IGILAGQSIGEPGTQLTMRTFHTGGI 343
>UniRef50_O21238 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Reclinomonas americana
Length = 1384
Score = 39.9 bits (89), Expect = 0.066
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAG 328
++G +AAQS+GEP TQ+T+ TFH G
Sbjct: 916 SIGIIAAQSIGEPGTQLTMRTFHQGG 941
>UniRef50_Q1L5Y5 Cluster: DNA-directed RNA polymerase; n=4;
Characeae|Rep: DNA-directed RNA polymerase - Chara
hispida
Length = 1144
Score = 38.7 bits (86), Expect = 0.15
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK-KPKAPSLTVF 421
+VGA+AAQ+LG+P Q+ L+ H AG+ + + +L+ ++N+SK KP + + F
Sbjct: 931 SVGAVAAQALGQPIQQLVLDAPHHAGLVGGPL---IKQLQAVLNLSKNKPNSTKKSQF 985
>UniRef50_Q4MY81 Cluster: DNA-directed RNA polymerase beta'' chain,
putative; n=1; Theileria parva|Rep: DNA-directed RNA
polymerase beta'' chain, putative - Theileria parva
Length = 363
Score = 38.7 bits (86), Expect = 0.15
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPK 400
N G ++ Q+LGEP+TQM L TFH G K VT + + +N+ K K
Sbjct: 219 NKGIISGQALGEPSTQMLLRTFHLGGGGLK-VT-NINKSTHDLNVKDKHK 266
>UniRef50_Q1NYR2 Cluster: DNA-directed RNA polymerase beta' chain;
n=1; Candidatus Sulcia muelleri str. Hc (Homalodisca
coagulata)|Rep: DNA-directed RNA polymerase beta' chain
- Candidatus Sulcia muelleri str. Hc (Homalodisca
coagulata)
Length = 524
Score = 38.3 bits (85), Expect = 0.20
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 263 LAAQSLGEPATQMTLNTFHFAGVS 334
+AAQS+GEP TQ+TL TFH G +
Sbjct: 2 IAAQSIGEPGTQLTLRTFHVGGTA 25
>UniRef50_Q6YHB9 Cluster: DNA-directed RNA polymerase; n=5;
Ranavirus|Rep: DNA-directed RNA polymerase - Ambystoma
tigrinum stebbensi virus
Length = 1294
Score = 37.5 bits (83), Expect = 0.35
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 397
VG L AQS+G TQ TL+TFH AG + G E++ +S+KP
Sbjct: 945 VGVLCAQSIGAKQTQQTLDTFHKAGGWLDDA--GSVPFGELLGLSQKP 990
>UniRef50_A6NYC6 Cluster: DNA-directed RNA polymerase; n=1;
Bacteroides capillosus ATCC 29799|Rep: DNA-directed RNA
polymerase - Bacteroides capillosus ATCC 29799
Length = 1101
Score = 37.5 bits (83), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSK-NVTLGVPRLKEII 379
VG +AA S+GEP TQ+++++F G++SK VT +L+ I
Sbjct: 842 VGFIAAHSIGEPGTQLSMDSFKKGGIASKGGVTSSFAKLEAYI 884
>UniRef50_Q2WGI5 Cluster: RNA polymerase beta'' chain; n=1;
Selaginella uncinata|Rep: RNA polymerase beta'' chain -
Selaginella uncinata (Blue spikemoss) (Peacock
spikemoss)
Length = 1467
Score = 37.5 bits (83), Expect = 0.35
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNV 346
VG A Q +GEP TQ TL TFH G+ + ++
Sbjct: 320 VGTTAGQPIGEPGTQSTLRTFHTGGIPTGDI 350
>UniRef50_Q5YF58 Cluster: DNA-directed RNA polymerase; n=6;
Iridoviridae|Rep: DNA-directed RNA polymerase - Rock
bream iridovirus
Length = 1168
Score = 37.1 bits (82), Expect = 0.46
Identities = 24/59 (40%), Positives = 29/59 (49%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG 430
VG + AQ+ G TQ TLN FH AG G R E++N+SKK L V G
Sbjct: 865 VGIVCAQAFGARQTQSTLNIFHKAGGLHDT---GSIRFGELLNLSKKSSRRLLYVHALG 920
>UniRef50_Q2N124 Cluster: RNA polymerase III large subunit; n=1;
Leucosolenia sp. AR-2003|Rep: RNA polymerase III large
subunit - Leucosolenia sp. AR-2003
Length = 227
Score = 36.7 bits (81), Expect = 0.61
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNT 313
VGA+AAQS+GEP TQMTL T
Sbjct: 208 VGAVAAQSIGEPGTQMTLKT 227
>UniRef50_A7AXE3 Cluster: RpoC2-N-terminal; n=1; Babesia bovis|Rep:
RpoC2-N-terminal - Babesia bovis
Length = 355
Score = 36.3 bits (80), Expect = 0.81
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 257 GALAAQSLGEPATQMTLNTFHFAGVSSKN 343
G ++AQ+LGEP+TQM L TFH + N
Sbjct: 219 GTISAQALGEPSTQMLLRTFHLGDKPALN 247
>UniRef50_Q9BHM4 Cluster: DNA-directed RNA polymerase; n=1;
Pleistophora sp. LS|Rep: DNA-directed RNA polymerase -
Pleistophora sp. LS
Length = 897
Score = 35.9 bits (79), Expect = 1.1
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTL 307
VG LAAQS+GEPATQMTL
Sbjct: 880 VGTLAAQSIGEPATQMTL 897
>UniRef50_A7BNB4 Cluster: DNA-directed RNA polymerase beta chain;
n=1; Beggiatoa sp. SS|Rep: DNA-directed RNA polymerase
beta chain - Beggiatoa sp. SS
Length = 254
Score = 35.1 bits (77), Expect = 1.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 352
+G +AAQS+GE TQ+T+ T GV+ + V +
Sbjct: 93 IGVMAAQSIGEAGTQLTMRTHRAGGVAKRAVAV 125
>UniRef50_Q9BHZ7 Cluster: DNA-directed RNA polymerase; n=2;
Glugeidae|Rep: DNA-directed RNA polymerase - Loma
acerinae
Length = 894
Score = 34.7 bits (76), Expect = 2.5
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTL 307
VG LA+QS+GEPATQMTL
Sbjct: 877 VGTLASQSIGEPATQMTL 894
>UniRef50_Q9BHM2 Cluster: DNA-directed RNA polymerase; n=5;
Pleistophoridae|Rep: DNA-directed RNA polymerase -
Pleistophora typicalis
Length = 1117
Score = 34.7 bits (76), Expect = 2.5
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTL 307
VG LA+QS+GEPATQMTL
Sbjct: 1100 VGTLASQSIGEPATQMTL 1117
>UniRef50_Q9BHK6 Cluster: DNA-directed RNA polymerase; n=1; Spraguea
lophii|Rep: DNA-directed RNA polymerase - Spraguea
lophii
Length = 585
Score = 34.7 bits (76), Expect = 2.5
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTL 307
VG LA+QS+GEPATQMTL
Sbjct: 568 VGTLASQSIGEPATQMTL 585
>UniRef50_Q2N100 Cluster: RNA polymerase I large subunit; n=1;
Aphrocallistes vastus|Rep: RNA polymerase I large
subunit - Aphrocallistes vastus
Length = 267
Score = 34.3 bits (75), Expect = 3.3
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTL 307
VG LAAQS+GEP+TQMTL
Sbjct: 250 VGILAAQSIGEPSTQMTL 267
>UniRef50_UPI0000499144 Cluster: DNA repair protein RAD51C; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DNA repair protein
RAD51C - Entamoeba histolytica HM-1:IMSS
Length = 283
Score = 33.1 bits (72), Expect = 7.6
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = -3
Query: 741 GLQLEIITKTQPLNFPQQSVPMLISCRSFSYGPVQYANNQGEIFARIKVR--HFVVNIDK 568
GL E I F V + C SY +Y N EI +I V H +V++
Sbjct: 90 GLNSESIYYDSYSQFCISRVQRMAECICASYP--EYKLNVKEILEKIHVYQPHDIVSLCS 147
Query: 567 FLVLCNNSILRIRVIINSRVAVTLRKVVCSNLQR 466
L+ NN + +++VII + +K +C++ R
Sbjct: 148 SLLSINNKLNKVKVIIIDSIPTFYKKAMCNDTIR 181
>UniRef50_A7LI82 Cluster: Replication protein; n=10; unclassified
Circovirus|Rep: Replication protein - Duck circovirus
Length = 297
Score = 33.1 bits (72), Expect = 7.6
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +2
Query: 302 TLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGA----ARDAEKAKNVL 469
TL+ FA V + G P L+ +N+ +A +L L GGA AR +++
Sbjct: 37 TLDNCKFAIVGEEKGANGTPHLQGFLNVRSNARAAALEESLGGGAWLSRARGSDEDNEEY 96
Query: 470 CRLEHTTLR 496
C E T LR
Sbjct: 97 CSKESTYLR 105
>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
protein - Plasmodium falciparum
Length = 960
Score = 33.1 bits (72), Expect = 7.6
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGV 331
++G ++++++ EP+TQM L TFH + +
Sbjct: 312 HIGVISSEAISEPSTQMVLRTFHASSI 338
>UniRef50_Q17B72 Cluster: Lysosomal trafficking regulator; n=3;
Culicidae|Rep: Lysosomal trafficking regulator - Aedes
aegypti (Yellowfever mosquito)
Length = 2259
Score = 33.1 bits (72), Expect = 7.6
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 576 IDKFLVLCNNSILRIRVIINSRVAVTLRKVVCSN 475
I+ L+L NNS +RIR +I + +AV +++CS+
Sbjct: 912 IETLLILANNSNIRIRTMIINLIAVISDRILCSS 945
>UniRef50_P42486 Cluster: DNA-directed RNA polymerase subunit 1; n=1;
African swine fever virus BA71V|Rep: DNA-directed RNA
polymerase subunit 1 - African swine fever virus (strain
BA71V) (ASFV)
Length = 1450
Score = 33.1 bits (72), Expect = 7.6
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 397
VG LAAQS+ EP TQ L++ H + N + G+ R +EI S KP
Sbjct: 1041 VGILAAQSVSEPLTQYMLDSHHRSVAGGTNKS-GIVRPQEI--FSAKP 1085
>UniRef50_A7PP92 Cluster: Chromosome chr8 scaffold_23, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr8 scaffold_23, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 342
Score = 32.7 bits (71), Expect = 10.0
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 9 SPIKV-IKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVS-EEHRLSS 182
SP ++ + D++ + GDD S++ EN +L + +V T + + H+ S
Sbjct: 148 SPFRIDVLDPKDVVPTSIQHPGDDDTSRKLGENISLSW--IVMDTTGRRAANLSSHKAVS 205
Query: 183 VAFEWLIGEIEARF 224
V WL GE++ RF
Sbjct: 206 VERHWLSGEVQLRF 219
>UniRef50_A5C3G1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 314
Score = 32.7 bits (71), Expect = 10.0
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 9 SPIKV-IKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVS-EEHRLSS 182
SP ++ + D++ + GDD S++ EN +L + +V T + + H+ S
Sbjct: 148 SPFRIDVLDPKDVVPTSIQHPGDDDTSRKLGENISLSW--IVMDTTGRRAANLSSHKAVS 205
Query: 183 VAFEWLIGEIEARF 224
V WL GE++ RF
Sbjct: 206 VERHWLSGEVQLRF 219
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 733,592,698
Number of Sequences: 1657284
Number of extensions: 14356409
Number of successful extensions: 33456
Number of sequences better than 10.0: 231
Number of HSP's better than 10.0 without gapping: 32390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33437
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -