Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0355.Seq
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 123 2e-28
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 119 2e-27
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 69 3e-12
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688 33 0.18
08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736... 31 0.98
02_04_0151 - 20240418-20240438,20240608-20240775,20240855-202409... 31 1.3
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077... 29 4.0
01_06_0845 - 32389889-32389909,32390074-32390241,32390334-323904... 29 4.0
12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 28 6.9
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 123 bits (296), Expect = 2e-28
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V+L
Sbjct: 1083 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPE 1142
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
+ E AKNV C LE+TTLR VT
Sbjct: 1143 VNKKKELAKNVQCALEYTTLRSVT 1166
Score = 90.2 bits (214), Expect = 2e-18
Identities = 40/84 (47%), Positives = 61/84 (72%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
D+ P+++++ + L ++ +V GDD +S +A +NATL F L+RST +K V +E+RL+
Sbjct: 999 DMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTK 1058
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AFEW+IGEIE+RF Q+ V PGEM
Sbjct: 1059 EAFEWVIGEIESRFLQSLVAPGEM 1082
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = +1
Query: 511 TAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD 603
T I+YDPDP T+I ED EFV YYEMPD D
Sbjct: 1169 TEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 633 RIELDRKRMTDKKLTWEQIAEE 698
RIEL+R+ M DKKL+ IAE+
Sbjct: 1211 RIELNREMMVDKKLSMADIAEK 1232
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 119 bits (287), Expect = 2e-27
Identities = 57/84 (67%), Positives = 68/84 (80%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K K PSL+V L
Sbjct: 1121 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLKPE 1180
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
+ E AKNV C LE+TTLR VT
Sbjct: 1181 VNKKKELAKNVQCALEYTTLRSVT 1204
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/84 (47%), Positives = 60/84 (71%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
D+ P++++ + L ++ +V GDD +S +A +NATL F L+RST +K V +E+RL+
Sbjct: 1037 DMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTK 1096
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AFEW+IGEIE+RF Q+ V PGEM
Sbjct: 1097 EAFEWVIGEIESRFLQSLVAPGEM 1120
Score = 50.4 bits (115), Expect = 2e-06
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = +1
Query: 511 TAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD 603
T I+YDPDP T+I ED EFV YYEMPD D
Sbjct: 1207 TEIWYDPDPLGTIIEEDAEFVQSYYEMPDED 1237
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 633 RIELDRKRMTDKKLTWEQIAEE 698
RIEL+R+ M DKKL+ IAE+
Sbjct: 1249 RIELNREMMVDKKLSMADIAEK 1270
>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 69.3 bits (162), Expect = 3e-12
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII 379
VG +AAQS+GEP+TQMTLNTFH AG NVTLG+PRLKE++
Sbjct: 1294 VGVVAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLKELL 1335
>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
Length = 761
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 550 IAEDQEFVNVYYEMPDFDPGENFALVIGVLNWTVR 654
+AED+ Y PDFD ++FA+ + VLNW +R
Sbjct: 227 LAEDKWIDTTYRGHPDFDRNDDFAVPV-VLNWAIR 260
>08_02_0193 -
14073103-14073246,14073332-14073481,14073571-14073640,
14073900-14074021,14074260-14074395,14074492-14074967
Length = 365
Score = 31.1 bits (67), Expect = 0.98
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 259 AYISPGFTCA-CWNLASISPISHSNATLDNLCSSDTNFVQSVDLTKHWKSNVAFSLACL 86
A I P +T CW L + +H + D + ++ DLTKHW S F +AC+
Sbjct: 295 AIILPLYTAGICWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDLTKHWIS--GFGVACI 351
>02_04_0151 -
20240418-20240438,20240608-20240775,20240855-20240962,
20241519-20241605,20241687-20241728,20241875-20241937,
20242007-20242069,20242129-20242497,20242577-20242669,
20242746-20242838,20242942-20243145,20243305-20243549,
20243649-20243808
Length = 571
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 187 ATLDNLCSSDTNFVQSVDLTKHWKSNVAFSLACLDKRSSPATM 59
+ L LC D ++ Q V+L K WKS +L C +SS A M
Sbjct: 175 SALYKLCPEDIDYDQWVELVKFWKSKKGKAL-CEKNKSSRAMM 216
>12_02_0683 +
22006770-22006935,22007030-22007274,22007524-22007727,
22007847-22007939,22008015-22008107,22008196-22008537,
22008675-22008737,22008812-22008892
Length = 428
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 187 ATLDNLCSSDTNFVQSVDLTKHWKSNVAFSLACLDKRS 74
+ L LC D Q + L K+WKS +L+ +KRS
Sbjct: 177 SALYKLCPDDVEKDQWIPLIKYWKSKKGKALSAKNKRS 214
>01_06_0845 -
32389889-32389909,32390074-32390241,32390334-32390453,
32390982-32391068,32391149-32391217,32391448-32391510,
32391648-32391989,32392245-32392337,32392457-32392660,
32392910-32393154,32393249-32393414
Length = 525
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 187 ATLDNLCSSDTNFVQSVDLTKHWKSNVAFSLACLDKRS 74
+ L LC D Q + L K+WKS +L+ +KRS
Sbjct: 177 SALYKLCPDDVEKDQWIPLIKYWKSKKGKALSAKNKRS 214
>12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160
Length = 1054
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 206 GNRGKIPASTSKSR*-NVGALAAQSL--GEPATQMTLNTFHFAGVSSKNVTLGVP 361
G G+IPA+ S R V ++A SL G PA+ +L+ F G+ N+ G+P
Sbjct: 167 GLHGEIPANFSNCRELRVFNISANSLSGGIPASFGSLSKLEFLGLHRSNLIGGIP 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,433,232
Number of Sequences: 37544
Number of extensions: 385197
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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