Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0355.Seq
(752 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 160 4e-39
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 160 4e-39
BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D... 91 4e-18
AY091461-1|AAM12031.1| 435|Homo sapiens RNA polymerase III subu... 91 4e-18
AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D... 91 4e-18
AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg... 89 1e-17
U33823-1|AAD09356.1| 441|Homo sapiens DNA-directed RNA polymera... 76 1e-13
U33460-1|AAC99959.1| 1717|Homo sapiens DNA-directed RNA polymera... 76 1e-13
BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I poly... 76 1e-13
BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I poly... 76 1e-13
BC017115-1|AAH17115.2| 574|Homo sapiens POLR1A protein protein. 76 1e-13
AC012511-1|AAY24277.1| 922|Homo sapiens unknown protein. 76 1e-13
AK025568-1|BAB15171.1| 495|Homo sapiens protein ( Homo sapiens ... 52 3e-06
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 160 bits (389), Expect = 4e-39
Identities = 82/126 (65%), Positives = 93/126 (73%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVFL G
Sbjct: 1087 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQ 1146
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTAXXXXXXXXXXXXXXXXXXKNLSMFTTKCLTLILAK 613
+ARDAE+AK++LCRLEHTTLRKVTA + + +A+
Sbjct: 1147 SARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206
Query: 614 ISPWLL 631
ISPWLL
Sbjct: 1207 ISPWLL 1212
Score = 107 bits (256), Expect = 6e-23
Identities = 52/84 (61%), Positives = 66/84 (78%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
DL PIKV++GV +L KK VIV GDD LS+QA ENATLLF +RSTLC++ ++EE RLS
Sbjct: 1003 DLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSG 1062
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AF+ L+GEIE++F QA +PGEM
Sbjct: 1063 EAFDLLLGEIESKFNQAIAHPGEM 1086
Score = 42.3 bits (95), Expect = 0.002
Identities = 22/35 (62%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Frame = +3
Query: 618 RLGYW--RIELDRKRMTDKKLTWEQIAEENLMAGF 716
R+ W R+ELDRK MTD+KLT EQIAE+ + AGF
Sbjct: 1206 RISPWLLRVELDRKHMTDRKLTMEQIAEK-INAGF 1239
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 160 bits (389), Expect = 4e-39
Identities = 82/126 (65%), Positives = 93/126 (73%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVFL G
Sbjct: 1087 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQ 1146
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTAXXXXXXXXXXXXXXXXXXKNLSMFTTKCLTLILAK 613
+ARDAE+AK++LCRLEHTTLRKVTA + + +A+
Sbjct: 1147 SARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206
Query: 614 ISPWLL 631
ISPWLL
Sbjct: 1207 ISPWLL 1212
Score = 112 bits (269), Expect = 1e-24
Identities = 53/84 (63%), Positives = 67/84 (79%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
DL PIKV++GV +L KK VIV GDD LS+QA ENATLLF +RSTLC++ ++EE RLS
Sbjct: 1003 DLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSG 1062
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AF+WL+GEIE++F QA +PGEM
Sbjct: 1063 EAFDWLLGEIESKFNQAIAHPGEM 1086
Score = 42.3 bits (95), Expect = 0.002
Identities = 22/35 (62%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Frame = +3
Query: 618 RLGYW--RIELDRKRMTDKKLTWEQIAEENLMAGF 716
R+ W R+ELDRK MTD+KLT EQIAE+ + AGF
Sbjct: 1206 RISPWLLRVELDRKHMTDRKLTMEQIAEK-INAGF 1239
>BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa protein.
Length = 1390
Score = 91.1 bits (216), Expect = 4e-18
Identities = 48/84 (57%), Positives = 59/84 (70%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQL--D 1090
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
DA+ A+ V R+E T L +++
Sbjct: 1091 KDDDADYARLVKGRIEKTLLGEIS 1114
>AY091461-1|AAM12031.1| 435|Homo sapiens RNA polymerase III subunit
RPC155-C protein.
Length = 435
Score = 91.1 bits (216), Expect = 4e-18
Identities = 48/84 (57%), Positives = 59/84 (70%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 302 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQL--D 359
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
DA+ A+ V R+E T L +++
Sbjct: 360 KDDDADYARLVKGRIEKTLLGEIS 383
>AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) (155kD) (RPC155) protein.
Length = 1390
Score = 91.1 bits (216), Expect = 4e-18
Identities = 48/84 (57%), Positives = 59/84 (70%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGAL AQS+GEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQL--D 1090
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
DA+ A+ V R+E T L +++
Sbjct: 1091 KDDDADYARLVKGRIEKTLLGEIS 1114
>AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest
subunit protein.
Length = 1391
Score = 89.4 bits (212), Expect = 1e-17
Identities = 47/84 (55%), Positives = 58/84 (69%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGAL AQS+GEP TQMTL TFHF GV+S N+TLGVPR+KEIIN SK P +T L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFGGVASMNITLGVPRIKEIINASKAISTPIITAQL--D 1090
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
DA+ A+ V R+E T L +++
Sbjct: 1091 KDDDADYARLVKGRIEKTLLGEIS 1114
>U33823-1|AAD09356.1| 441|Homo sapiens DNA-directed RNA polymerase
I largest subunit protein.
Length = 441
Score = 76.2 bits (179), Expect = 1e-13
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP--SLTVFL 424
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P S+ V
Sbjct: 279 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLN 338
Query: 425 TGGAARDAEKAKNVLCRL 478
T A + + K L R+
Sbjct: 339 TKKALKRVKSLKKQLTRV 356
>U33460-1|AAC99959.1| 1717|Homo sapiens DNA-directed RNA polymerase I,
largest subunit protein.
Length = 1717
Score = 76.2 bits (179), Expect = 1e-13
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP--SLTVFL 424
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P S+ V
Sbjct: 1212 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLN 1271
Query: 425 TGGAARDAEKAKNVLCRL 478
T A + + K L R+
Sbjct: 1272 TKKALKRVKSLKKQLTRV 1289
>BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 76.2 bits (179), Expect = 1e-13
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP--SLTVFL 424
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P S+ V
Sbjct: 1211 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLN 1270
Query: 425 TGGAARDAEKAKNVLCRL 478
T A + + K L R+
Sbjct: 1271 TKKALKRVKSLKKQLTRV 1288
>BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 76.2 bits (179), Expect = 1e-13
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP--SLTVFL 424
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P S+ V
Sbjct: 1211 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLN 1270
Query: 425 TGGAARDAEKAKNVLCRL 478
T A + + K L R+
Sbjct: 1271 TKKALKRVKSLKKQLTRV 1288
>BC017115-1|AAH17115.2| 574|Homo sapiens POLR1A protein protein.
Length = 574
Score = 76.2 bits (179), Expect = 1e-13
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP--SLTVFL 424
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P S+ V
Sbjct: 65 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLN 124
Query: 425 TGGAARDAEKAKNVLCRL 478
T A + + K L R+
Sbjct: 125 TKKALKRVKSLKKQLTRV 142
>AC012511-1|AAY24277.1| 922|Homo sapiens unknown protein.
Length = 922
Score = 76.2 bits (179), Expect = 1e-13
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP--SLTVFL 424
VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K P S+ V
Sbjct: 413 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLN 472
Query: 425 TGGAARDAEKAKNVLCRL 478
T A + + K L R+
Sbjct: 473 TKKALKRVKSLKKQLTRV 490
>AK025568-1|BAB15171.1| 495|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21915 fis, clone HEP03920. ).
Length = 495
Score = 51.6 bits (118), Expect = 3e-06
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +2
Query: 299 MTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP--SLTVFLTGGAARDAEKAKNVL 469
MTLNTFHFAG NVTLG+PRL+EI+ + S K P S+ V T A + + K L
Sbjct: 1 MTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQL 60
Query: 470 CRL 478
R+
Sbjct: 61 TRV 63
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,331,493
Number of Sequences: 237096
Number of extensions: 2180332
Number of successful extensions: 3928
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3924
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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