Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0355.Seq
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 151 7e-37
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 144 8e-35
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,... 87 1e-17
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr... 84 1e-16
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr... 84 1e-16
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ... 84 1e-16
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 29 4.7
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 29 4.7
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 28 6.2
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 28 6.2
AF039712-2|AAK21401.1| 401|Caenorhabditis elegans Hypothetical ... 28 8.2
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 151 bits (365), Expect = 7e-37
Identities = 72/84 (85%), Positives = 79/84 (94%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVFLTG
Sbjct: 1077 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGA 1136
Query: 434 AARDAEKAKNVLCRLEHTTLRKVT 505
AA+D EKAK+VLC+LEHTTL+KVT
Sbjct: 1137 AAKDPEKAKDVLCKLEHTTLKKVT 1160
Score = 106 bits (254), Expect = 2e-23
Identities = 50/84 (59%), Positives = 65/84 (77%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
+LSP+ VI GV +L KK +IV+G+D +SKQA NATLL L+RSTLCTK + + +L+S
Sbjct: 993 NLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNS 1052
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AF+WL+GEIE+RFQQA PGEM
Sbjct: 1053 EAFDWLLGEIESRFQQAIAQPGEM 1076
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/33 (75%), Positives = 31/33 (93%)
Frame = +1
Query: 505 CYTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD 603
C TAIYYDPDP+NTVIAED+E+V+++YEMPD D
Sbjct: 1161 CNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHD 1193
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = +3
Query: 633 RIELDRKRMTDKKLTWEQIAEENLMAGF 716
RIELDRKRM DKKLT E IA + + GF
Sbjct: 1203 RIELDRKRMVDKKLTMEMIA-DRIHGGF 1229
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 144 bits (348), Expect = 8e-35
Identities = 70/85 (82%), Positives = 77/85 (90%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGALAAQSLGEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVFLTG
Sbjct: 1087 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGA 1146
Query: 434 AARDAEKAKNVLCRLEHTTLRKVTA 508
AA+D EKAK+VLC+LEHTT+ TA
Sbjct: 1147 AAKDPEKAKDVLCKLEHTTVTCNTA 1171
Score = 106 bits (254), Expect = 2e-23
Identities = 50/84 (59%), Positives = 65/84 (77%)
Frame = +3
Query: 3 DLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSS 182
+LSP+ VI GV +L KK +IV+G+D +SKQA NATLL L+RSTLCTK + + +L+S
Sbjct: 1003 NLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNS 1062
Query: 183 VAFEWLIGEIEARFQQAQVNPGEM 254
AF+WL+GEIE+RFQQA PGEM
Sbjct: 1063 EAFDWLLGEIESRFQQAIAQPGEM 1086
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/33 (75%), Positives = 31/33 (93%)
Frame = +1
Query: 505 CYTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD 603
C TAIYYDPDP+NTVIAED+E+V+++YEMPD D
Sbjct: 1168 CNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHD 1200
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = +3
Query: 633 RIELDRKRMTDKKLTWEQIAEENLMAGF 716
RIELDRKRM DKKLT E IA + + GF
Sbjct: 1210 RIELDRKRMVDKKLTMEMIA-DRIHGGF 1236
>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
class iii (c) protein1 protein.
Length = 1400
Score = 87.4 bits (207), Expect = 1e-17
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +2
Query: 254 VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGG 433
VGA+AA S+GEP+TQMTL TFHFAGV+S N+T GVPR+KEIIN K P +T L
Sbjct: 1046 VGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLD- 1104
Query: 434 AARDAEKAKNVLCRLEHTTLRKV 502
D A+ V R+E TTL ++
Sbjct: 1105 -PYDESLARRVKARIEKTTLGEI 1126
>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLT 427
NVG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ SK PS ++ +
Sbjct: 1234 NVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVI 1293
Query: 428 GGAARD 445
G +RD
Sbjct: 1294 AGTSRD 1299
>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLT 427
NVG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ SK PS ++ +
Sbjct: 1234 NVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVI 1293
Query: 428 GGAARD 445
G +RD
Sbjct: 1294 AGTSRD 1299
>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Frame = +2
Query: 251 NVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLTVFLT 427
NVG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ SK PS ++ +
Sbjct: 1234 NVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVI 1293
Query: 428 GGAARD 445
G +RD
Sbjct: 1294 AGTSRD 1299
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
trithorax-related protein LIN-59 protein.
Length = 1312
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -2
Query: 256 YISPGFTCACWNLASISPISHSNATLDNLCSSDTNFVQSVDLTKHWKSNVAFSLACLD-K 80
+++P TC C A S + N L CSSD + V + WK + L +
Sbjct: 588 WMAPSLTCGCTKGACTSDMDCLNRALRVQCSSDCS-VPYCSNRRFWKEDCGNKLCVSNGP 646
Query: 79 RSSPATMTHFFRRS 38
RS T RR+
Sbjct: 647 RSKRVLKTKIARRA 660
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -2
Query: 256 YISPGFTCACWNLASISPISHSNATLDNLCSSDTNFVQSVDLTKHWKSNVAFSLACLD-K 80
+++P TC C A S + N L CSSD + V + WK + L +
Sbjct: 588 WMAPSLTCGCTKGACTSDMDCLNRALRVQCSSDCS-VPYCSNRRFWKEDCGNKLCVSNGP 646
Query: 79 RSSPATMTHFFRRS 38
RS T RR+
Sbjct: 647 RSKRVLKTKIARRA 660
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 329 VSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVL 469
+ SKNV P E+ NI K +AP + T R A++A+ VL
Sbjct: 2078 IISKNVRSLAPSASELSNILGKLRAPEMQEETTDLKIRQAQQARVVL 2124
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 329 VSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVL 469
+ SKNV P E+ NI K +AP + T R A++A+ VL
Sbjct: 2078 IISKNVRSLAPSASELSNILGKLRAPEMQEETTDLKIRQAQQARVVL 2124
>AF039712-2|AAK21401.1| 401|Caenorhabditis elegans Hypothetical
protein F54D7.3 protein.
Length = 401
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 588 FVVNIDKFLVLCNNSILRIR 529
FV N+ FL+LC N ++++R
Sbjct: 35 FVGNVTMFLILCRNQLVKVR 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,163,720
Number of Sequences: 27780
Number of extensions: 359807
Number of successful extensions: 909
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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