Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0355.Seq
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   7.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.4  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = +1

Query: 475 IRTYNFT*SYC--YTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDP 606
           I TY    +Y   Y   Y DP+ +     ED E    YY M +  P
Sbjct: 197 IETYIVNTNYSSKYMREYNDPEYKLDYFMEDVELNAYYYYMREMLP 242


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 371 EIINISKKPKAPSLTVFLTGGAARDAEKAK 460
           EI NI   P+  + T+F+ GG   + +  K
Sbjct: 18  EIYNIIASPQLNNPTLFMIGGVFSNNKSKK 47


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 419 FLTGGAARDAEKA 457
           F  GGAARD  KA
Sbjct: 196 FANGGAARDESKA 208


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 621  LGYWRIELDR 650
            LG+WR+E+ R
Sbjct: 1225 LGFWRVEMPR 1234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,614
Number of Sequences: 438
Number of extensions: 4185
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)