Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0352.Seq
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    27   0.16 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    27   0.16 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    27   0.16 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    27   0.16 
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   3.3  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   3.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   5.8  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 727 SPDETVPXRCRTYPNQVRRVRRSRGWPGFQSP 632
           S DE+ P     Y    R V+ ++GW  F+ P
Sbjct: 17  SDDESSPLTENIYGGSTRTVQETKGWDVFRDP 48


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 727 SPDETVPXRCRTYPNQVRRVRRSRGWPGFQSP 632
           S DE+ P     Y    R V+ ++GW  F+ P
Sbjct: 17  SDDESSPLTENIYGGSTRTVQETKGWDVFRDP 48


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 727 SPDETVPXRCRTYPNQVRRVRRSRGWPGFQSP 632
           S DE+ P     Y    R V+ ++GW  F+ P
Sbjct: 17  SDDESSPLTENIYGGSTRTVQETKGWDVFRDP 48


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 727 SPDETVPXRCRTYPNQVRRVRRSRGWPGFQSP 632
           S DE+ P     Y    R V+ ++GW  F+ P
Sbjct: 17  SDDESSPLTENIYGGSTRTVQETKGWDVFRDP 48


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 668 SPEPRLARVSVTKLLPLIPLSRTCPM*TSTRAIQVLSQMT 549
           SP  +   +S  K+L  + L  TC   TS     +L+QMT
Sbjct: 20  SPMTQKLTLSPLKVLQTVILGTTCIYLTSLYIWFILTQMT 59



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 406 ISLVFDFILGDFSVVIDNCFCSSVILDLSVVV 501
           ISL+F  ++GD   V+++    +V   L +V+
Sbjct: 246 ISLIFVVLIGDAYAVLNSVLFQNVYKPLPIVL 277


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 668 SPEPRLARVSVTKLLPLIPLSRTCPM*TSTRAIQVLSQMT 549
           SP  +   +S  K+L  + L  TC   TS     +L+QMT
Sbjct: 20  SPMTQKLTLSPLKVLQTVILGTTCIYLTSLYIWFILTQMT 59



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 406 ISLVFDFILGDFSVVIDNCFCSSVILDLSVVV 501
           ISL+F  ++GD   V+++    +V   L +V+
Sbjct: 246 ISLIFVVLIGDAYAVLNSVLFQNVYKPLPIVL 277


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 710 SPAMQNLSESGSARSPEPRLARVSVTKL 627
           +P+M  LS     RSP P    +S + L
Sbjct: 190 TPSMYPLSPGAGFRSPYPSALPISTSSL 217


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 710 SPAMQNLSESGSARSPEPRLARVSVTKL 627
           +P+M  LS     RSP P    +S + L
Sbjct: 82  TPSMYPLSPGAGFRSPYPSALPISTSSL 109


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = -2

Query: 385 ISIRNFQRSTLIFKCSHNKISNTSLITF-----WSLKFSK 281
           +S  NF+  + +  CS+  + + S  TF     W + FSK
Sbjct: 101 VSNNNFKTYSNVTTCSYYSLDDLSEDTFYDIRLWGVSFSK 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,676
Number of Sequences: 336
Number of extensions: 2806
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)