Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0352.Seq
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    29   0.90 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    28   1.2  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.1  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   4.8  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 361 STLIFKCSHNKISNTSLITFW 299
           ST IF CS +KI N  L+ FW
Sbjct: 512 STFIFLCSLSKILNGPLVPFW 532


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 574  ARVLVHIGHVRDRGINGSNLVTETRASRGSGERAEPDSDRFCIAGELFRPV 726
            +R + H GH    G++GS+  ++  + RG GER +PD     I  +   P+
Sbjct: 928  SRGVSHHGH---GGMSGSHRGSQRGSRRGGGERDKPDPSSLTIPVDQVAPL 975


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 352 IFKCSHNKISNTSLITFWSLKFSKIMAKH 266
           I K SH+KIS + LIT   + +S++  K+
Sbjct: 18  ISKISHSKISISELITLLDIHYSELFTKN 46


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 719 RNSSPAMQNLSESGSARSPEPRLARVSVTKLLPLIPLSRTCPM*TSTRAIQVL 561
           +N SPA  + +ESG+  S EP   +   T + P  P+SR     +  + I +L
Sbjct: 280 KNESPADVSNNESGNESSKEP--DKEHSTPIHPTTPVSRCARPSSRQQTISIL 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,166
Number of Sequences: 5004
Number of extensions: 45380
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)