Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0352.Seq
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    31   0.64 
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    31   0.64 
Z81589-5|CAB04722.1|  233|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81589-4|CAB04721.1|  256|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AC024882-2|AAF60935.2|  344|Caenorhabditis elegans Seven tm rece...    28   7.9  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 571  FRCSAK*R*SIRPVSRLLRTPVCERQ-RRGQESQSCRNSCQ 452
            ++C A     I PV R    P+CE + R G+  QSC+N CQ
Sbjct: 1562 YKCDATDGKCICPVGR--HGPLCEEECRPGRYGQSCQNKCQ 1600


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 571  FRCSAK*R*SIRPVSRLLRTPVCERQ-RRGQESQSCRNSCQ 452
            ++C A     I PV R    P+CE + R G+  QSC+N CQ
Sbjct: 1562 YKCDATDGKCICPVGR--HGPLCEEECRPGRYGQSCQNKCQ 1600


>Z81589-5|CAB04722.1|  233|Caenorhabditis elegans Hypothetical
           protein T08G5.9 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 728 FTGRNSSPAM-QNLSESGSARSPEPRLARVSVTKL 627
           FTG N++    Q LSES     PEP   R +VT L
Sbjct: 69  FTGENANKQKRQRLSESTENSIPEPAFLRSNVTSL 103


>Z81589-4|CAB04721.1|  256|Caenorhabditis elegans Hypothetical
           protein T08G5.8 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 728 FTGRNSSPAM-QNLSESGSARSPEPRLARVSVTKL 627
           FTG N++    Q LSES     PEP   R +VT L
Sbjct: 92  FTGENANKQKRQRLSESTENSIPEPAFLRSNVTSL 126


>Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical
            protein C53A5.2 protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -2

Query: 613  PYPEH--AQCEQVHELFRCSAK*R*SIRPVSRLLRTPVCERQRRGQESQSCRNSCQ*QRK 440
            P+P+   AQCE        S + +   R +SRL  TP C    RG  +    N    +R+
Sbjct: 875  PFPDEPEAQCESEEAEEPSSKRIKMFARCLSRLTATPSCSTSSRGAAALPSINLYSFRRR 934

Query: 439  SHQV*SRKLN 410
              +  S K N
Sbjct: 935  IAEKLSNKYN 944


>Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical protein
            C53A5.2 protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -2

Query: 613  PYPEH--AQCEQVHELFRCSAK*R*SIRPVSRLLRTPVCERQRRGQESQSCRNSCQ*QRK 440
            P+P+   AQCE        S + +   R +SRL  TP C    RG  +    N    +R+
Sbjct: 875  PFPDEPEAQCESEEAEEPSSKRIKMFARCLSRLTATPSCSTSSRGAAALPSINLYSFRRR 934

Query: 439  SHQV*SRKLN 410
              +  S K N
Sbjct: 935  IAEKLSNKYN 944


>AC024882-2|AAF60935.2|  344|Caenorhabditis elegans Seven tm
           receptor protein 156 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 428 YLVTFPLLLTTVSAAL*FLTSPLSFTDRST 517
           YL+ +   LT V AAL F+ +P  F D ST
Sbjct: 43  YLLIYFSALTIVYAALDFVAAPYMFNDEST 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,682
Number of Sequences: 27780
Number of extensions: 255203
Number of successful extensions: 545
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)