Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0352.Seq
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        27   0.18 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.73 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.0  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 676 RRVRRSRGWPGFQSPSCFH*SPYPEHAQCE 587
           +R+R +  W  +  P C++ +P    AQCE
Sbjct: 205 KRMRPAANWGYYAYPYCYNLTPNQPSAQCE 234


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 525 VFFVLLSVNDNGEVKNHRAAETVVNNNGKVTKYK 424
           V F +L  N N  +KN R A++  N N    KYK
Sbjct: 399 VNFRILGANVNNLIKNTRCAKS-NNQNNNQNKYK 431


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 16  IIFYQFEIDNKNTLI 60
           I+ Y F+  NKN LI
Sbjct: 390 ILGYNFDFQNKNNLI 404


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 16  IIFYQFEIDNKNTLI 60
           I+ Y F+  NKN LI
Sbjct: 390 ILGYNFDFQNKNNLI 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,067
Number of Sequences: 438
Number of extensions: 3363
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)