Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0352.Seq
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14850.2 68416.m01876 expressed protein                             29   3.2  
At3g14850.1 68416.m01877 expressed protein                             29   3.2  
At5g07220.1 68418.m00823 BAG domain-containing protein contains ...    27   9.6  
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa...    27   9.6  

>At3g14850.2 68416.m01876 expressed protein
          Length = 321

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 570 NSSCTCSHWACSG*GD*WKQL 632
           NSS  CSHW  SG  D W ++
Sbjct: 294 NSSGDCSHWCLSGVPDTWNEI 314


>At3g14850.1 68416.m01877 expressed protein
          Length = 253

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 570 NSSCTCSHWACSG*GD*WKQL 632
           NSS  CSHW  SG  D W ++
Sbjct: 226 NSSGDCSHWCLSGVPDTWNEI 246


>At5g07220.1 68418.m00823 BAG domain-containing protein contains
           Pfam:PF02179 BAG domain
          Length = 303

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 471 AAETVVNNNGKVTKYKVEN*TNKISNKIKFLYAIFSD 361
           A ETV+N  GKV +  + N    + N++  L AI +D
Sbjct: 155 AFETVINKGGKVEEKSLVNLIEMLMNQLLRLDAIIAD 191


>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 299

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 552 DGNQFVQCLVFFVLLSVNDNGEVKNHRAAETVV 454
           +GN++V   ++ +  +V+DNGE  N R  E V+
Sbjct: 213 NGNRYVLQEIYGIGNTVDDNGEDANERGKECVI 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,722,317
Number of Sequences: 28952
Number of extensions: 224174
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)