Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0351.Seq
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    29   0.64 
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    27   3.4  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    26   5.9  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    26   5.9  

>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 385 NNQSDNTQEDNNTLDNIRGHNNRMGSILGHNSSVDSTPGH--NTGRAIPRSAISGLSXP 555
           N Q + T  +N + + +   +  + +  G+    D+TP    N GR  P+SAIS ++ P
Sbjct: 51  NAQKNITHNENKSAEPLSRQSTILDADEGNQDVSDTTPNACLNEGRHSPKSAISCVTQP 109


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 391 QSDNTQEDNNTLDNIRGHNNRMGS---ILGHNSSVDSTPG 501
           Q + TQE+ N +D IRG    +G+   I+  + ++ ST G
Sbjct: 95  QDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTAG 134


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 441 AQQPDGQYPGAQQLGGQYPGAQYRA 515
           A Q  G +PG    GG +PG  Y +
Sbjct: 434 AYQAGGSFPGGGFPGGGFPGGSYNS 458


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 448 NRMGSILGHNSSVDSTPGHNTG 513
           N  GS   H SS+DS PG+ +G
Sbjct: 120 NSNGSSPSHTSSLDSIPGYASG 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,226
Number of Sequences: 5004
Number of extensions: 42096
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)