Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0351.Seq
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    36   0.041
06_03_0429 - 20701107-20701534,20701628-20701847                       30   1.5  
02_04_0413 + 22681957-22682035,22682253-22682788                       29   4.7  
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428...    28   6.2  
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544...    28   6.2  
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    28   8.1  
12_02_0155 + 14497847-14498012,14499612-14499695,14500196-14500551     28   8.1  
10_07_0173 - 13811731-13811754,13811843-13811926,13812041-138120...    28   8.1  

>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 190 RISSAKSETPVPAQAPITHPLLEWSP-RSTYP*PPHPGSTPGCNRGS 327
           ++SS  S  P P   PI +P     P R   P PP PGS PG  R S
Sbjct: 15  KVSSVSSSKPKPKPTPIRNPTPPPPPPRRRTPPPPPPGSGPGPQRPS 61


>06_03_0429 - 20701107-20701534,20701628-20701847
          Length = 215

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 193 ISSAKSETPVPAQAPITHPLLEWSPRSTYP*PPHPGSTP 309
           + SA S  P PA +PI  P    +  +  P PP P  +P
Sbjct: 135 VDSAPSPAPAPAASPIAKPPAAVTAATPPPPPPPPSPSP 173


>02_04_0413 + 22681957-22682035,22682253-22682788
          Length = 204

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = -1

Query: 370 CPTDGCGAGNCEPW-YCPGCIPGYCPGAGAKGMCCGGSTP 254
           C   GCG G C P   C    P   PG    G C GG  P
Sbjct: 119 CSGGGCGGGQCPPSPSCENHHPPCKPGCCCCG-CSGGECP 157


>07_01_0577 -
           4286048-4286186,4286600-4286660,4286957-4287089,
           4287286-4287350,4288346-4288451,4288529-4288750,
           4289619-4289852,4289948-4290037,4290605-4291507
          Length = 650

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 199 SAKSETPVPAQAPITHPLLEWSPRSTYP*PPHPGST 306
           +A    P P   P   P L   P ST P PP P ++
Sbjct: 52  AATPPPPPPPPTPAVEPTLPIPPASTPPTPPQPSAS 87


>04_04_0137 -
           23053148-23053798,23053911-23054146,23054268-23054458,
           23054587-23056010
          Length = 833

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 193 ISSAKSETPVPAQAPITHPLLEWSPRSTYP*PPHPGSTPGCNRGSTRA 336
           +SSA +  P PA+A +  PLL  + R   P P   G   G  RG+  A
Sbjct: 72  VSSAPAPAPAPARAHLPPPLLHKNARLPDPVPGRVGL--GHRRGNATA 117


>12_02_0800 +
           23299674-23299678,23299714-23299791,23299876-23299920,
           23300052-23300415,23300493-23300574,23300793-23300873,
           23300974-23302106,23302202-23302350,23302426-23302516,
           23303628-23305940
          Length = 1446

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 528 SWYCPPGIVPRGTVHRAVVP 469
           SW+ PPG  P G  HR   P
Sbjct: 276 SWHAPPGHPPDGMWHRGAAP 295


>12_02_0155 + 14497847-14498012,14499612-14499695,14500196-14500551
          Length = 201

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 355 CGAGNCEPW-YCPGCIPGYCP 296
           CGAGN E W +C  CIP + P
Sbjct: 169 CGAGNGEQWSHC--CIPSFVP 187


>10_07_0173 -
           13811731-13811754,13811843-13811926,13812041-13812093,
           13812449-13812513,13812602-13812675,13812847-13812924,
           13813137-13813297,13813478-13813534,13813655-13813765,
           13814159-13814273,13814691-13814846,13815041-13815124
          Length = 353

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 165 LEHQKLCRLLYGIVRPLKECDRFNTEFGPKLNHLS 61
           LE +   RL+Y + R   E ++ NT+F PKL  +S
Sbjct: 189 LELRNRARLIYEL-RERLEAEKLNTKFQPKLEEIS 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,553,035
Number of Sequences: 37544
Number of extensions: 331412
Number of successful extensions: 1049
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)