Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0351.Seq
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    31   0.60 
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      30   1.4  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    30   1.4  
Z81064-2|CAB02963.1|  259|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   4.2  
U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (gr...    28   5.5  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z77663-2|CAB01209.1|  215|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   9.7  
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
            K04H4.2c protein.
          Length = 1446

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 14/112 (12%)
 Frame = -1

Query: 508  YCAPGY-CPPSCCAPGYCPSXXXXXXXXXXXXXXXXXXXXXXCTIEY-CPTDGC--GAGN 341
            YCA GY C  + C P Y  +                      C   Y C  + C      
Sbjct: 903  YCATGYSCIQNQCCPSYNSAPRISVYTCPSGGNAVGACMSGRCASGYTCSNNVCCPQTTT 962

Query: 340  CEPWYCP-------GCIPGYCPGAG---AKGMCCGGSTPTTDALSALELVRA 215
              P+ CP       GC+ G C G G   + G+CC G++ T   L   + V A
Sbjct: 963  TNPFVCPDGTQAAGGCVNGQC-GTGYTCSNGLCCAGTSTTVKCLDGSDAVGA 1013


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 14/112 (12%)
 Frame = -1

Query: 508 YCAPGY-CPPSCCAPGYCPSXXXXXXXXXXXXXXXXXXXXXXCTIEY-CPTDGC--GAGN 341
           YCA GY C  + C P Y  +                      C   Y C  + C      
Sbjct: 245 YCATGYSCIQNQCCPSYNSAPRISVYTCPSGGNAVGACMSGRCASGYTCSNNVCCPQTTT 304

Query: 340 CEPWYCP-------GCIPGYCPGAG---AKGMCCGGSTPTTDALSALELVRA 215
             P+ CP       GC+ G C G G   + G+CC G++ T   L   + V A
Sbjct: 305 TNPFVCPDGTQAAGGCVNGQC-GTGYTCSNGLCCAGTSTTVKCLDGSDAVGA 355


>Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical
           protein K04H4.2a protein.
          Length = 628

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 14/112 (12%)
 Frame = -1

Query: 508 YCAPGY-CPPSCCAPGYCPSXXXXXXXXXXXXXXXXXXXXXXCTIEY-CPTDGC--GAGN 341
           YCA GY C  + C P Y  +                      C   Y C  + C      
Sbjct: 245 YCATGYSCIQNQCCPSYNSAPRISVYTCPSGGNAVGACMSGRCASGYTCSNNVCCPQTTT 304

Query: 340 CEPWYCP-------GCIPGYCPGAG---AKGMCCGGSTPTTDALSALELVRA 215
             P+ CP       GC+ G C G G   + G+CC G++ T   L   + V A
Sbjct: 305 TNPFVCPDGTQAAGGCVNGQC-GTGYTCSNGLCCAGTSTTVKCLDGSDAVGA 355


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = -1

Query: 370 CPTDGCGAGNCEPWY-CPGCIPGYCPGA---GAKGMCCGGSTPTTDALSALELVRASPI* 203
           CP+  CG G+C  +  CP      C  A       +C     P  D+ + + LVR+ P  
Sbjct: 49  CPSGNCGCGSCSGFVTCPDRCQPMCTQACVMAKTSVCVDQCMPKCDS-ACINLVRSGPSC 107

Query: 202 QMRCV 188
             +C+
Sbjct: 108 DQQCM 112


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 223  PAQAPITHPLLEWSPRSTYP*PPHPGSTPGCNRGS 327
            P   P   P +   P   YP PP PG+ PG +R S
Sbjct: 1280 PPLQPPPPPQMTGPPIGIYPGPPAPGNLPGSSRPS 1314


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 223  PAQAPITHPLLEWSPRSTYP*PPHPGSTPGCNRGS 327
            P   P   P +   P   YP PP PG+ PG +R S
Sbjct: 1280 PPLQPPPPPQMTGPPIGIYPGPPAPGNLPGSSRPS 1314


>Z81064-2|CAB02963.1|  259|Caenorhabditis elegans Hypothetical
           protein F16B12.2 protein.
          Length = 259

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 25/92 (27%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
 Frame = -1

Query: 505 CAPGYCPPSCCAPGYCPSXXXXXXXXXXXXXXXXXXXXXXCTIEYC-PTDGCGAG----- 344
           CAPGY  P+C     CP                          EYC P+  C  G     
Sbjct: 48  CAPGYSGPNCDKVD-CPFNCHNHGSCEVPGKCMCSQGFFGTYCEYCKPSTTCKHGAVLVN 106

Query: 343 --NCEPWYCPGCIPGYCPGAGAKGMCCGGSTP 254
              C P+ C  C  GY    G K   C  + P
Sbjct: 107 ELGCHPYTC-RCFEGYAGDNGDKDDVCYYAKP 137


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 208 SETPV--PAQAPITHPLLEWSPRSTYP*PPHPGS 303
           S  PV  P Q+P+THP +   PR   P PP   S
Sbjct: 241 SRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPS 274


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 208 SETPV--PAQAPITHPLLEWSPRSTYP*PPHPGS 303
           S  PV  P Q+P+THP +   PR   P PP   S
Sbjct: 241 SRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPS 274


>U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (grd
           related) protein10 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -1

Query: 358 GCGAGNCEPW-YCPGCIPGYCPGAGAKGMCCGGSTPTTD 245
           G GA  C P   CP   P  C G+G + +  G  T T D
Sbjct: 29  GGGACGCAPRPACPPPPPSGCSGSGVRAVARGAKTMTFD 67


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -1

Query: 358 GCGAGNCEPWYCPGCIPGYCPGAGAKGMCCGG 263
           GCG G   P   P C  G   G G  G  CGG
Sbjct: 104 GCGGGCAPPPPPPACGGGCGGGGGGCGGGCGG 135


>Z77663-2|CAB01209.1|  215|Caenorhabditis elegans Hypothetical
           protein F53F4.2 protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = -1

Query: 367 PTDGCGAGNCEPWYCPGCIPGYCPG----AGAKGMCCGGS 260
           P+ G   G   P Y  G   GY  G     GA G CCGG+
Sbjct: 141 PSYGQSYGQSYPSYGMGMGYGYAAGYPMMGGAGGACCGGT 180


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 319 GCIPGY-CPGAGAKGMCCGGSTP 254
           GC+PG   PGAG  G CC  + P
Sbjct: 19  GCLPGLGLPGAGGGG-CCSSAQP 40


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 388 NQSDNTQEDNNTLDNIRGHNNRMGSILGHNSSVDS 492
           NQ D  +E    LDN R    R   I  HN ++D+
Sbjct: 577 NQLDKAKESRKKLDNDRDKLQRKLDICDHNLTIDN 611


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,368,299
Number of Sequences: 27780
Number of extensions: 259862
Number of successful extensions: 903
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)