Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0351.Seq
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18810.1 68416.m02389 protein kinase family protein contains ...    31   0.96 
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    30   1.3  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    30   1.3  
At1g58210.1 68414.m06610 kinase interacting family protein simil...    29   3.9  
At5g02920.1 68418.m00235 F-box family protein low similarity to ...    27   9.0  
At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa...    27   9.0  

>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 22/103 (21%), Positives = 39/103 (37%)
 Frame = +1

Query: 205 KSETPVPAQAPITHPLLEWSPRSTYP*PPHPGSTPGCNRGSTRAXXXXXXXXXXDNIRLY 384
           +  +P P+ +    P     P  +    P P S+   +  S +           +N    
Sbjct: 26  QQSSPPPSDSSSPSPPAPPPPDDSSNGSPQPPSSDSQSPPSPQGNNNNDGNNGNNNNDNN 85

Query: 385 NNQSDNTQEDNNTLDNIRGHNNRMGSILGHNSSVDSTPGHNTG 513
           NN + N   DNN  +N   +NN   +   +N+  D+   +N G
Sbjct: 86  NNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNG 128



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
 Frame = +1

Query: 208 SETPVPAQAPITHPLLEWSPRSTYP*PPHPGSTPGCNRGSTRAXXXXXXXXXXDNIRLYN 387
           S +P P   P        SP+        P S  G N                +N    N
Sbjct: 35  SSSPSPPAPPPPDDSSNGSPQPPSSDSQSPPSPQGNNNNDGNNGNNNNDNNNNNNGNNNN 94

Query: 388 -NQSDNTQEDNNTLDNIRGHNNRMGSILGHNSSVDSTPGHN 507
            N + N +++NN  +N  G+NN      G+N++ ++   +N
Sbjct: 95  DNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNGNNNDNNN 135



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +1

Query: 388 NQSDNTQEDNNTLDNIRGHNNRMGSILGHNSSVDSTPGHNTGRAIPRSAISG 543
           N ++    DNN  +N  G NNR       NS  +S P      A PRS+  G
Sbjct: 124 NNNNGNNNDNNNQNNGGGSNNRSPPPPSRNSDRNS-PSPPRALAPPRSSGGG 174


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 190 RISSAKSETPVPAQAPITHPLLEWSPRSTYP*PPHPGSTP 309
           R+ +A+  TP P       P L+ +PR T P PP P S P
Sbjct: 244 RLDAARPTTPRPPSPLADAPRLD-APRPTTPKPPSPRSDP 282


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 190 RISSAKSETPVPAQAPITHPLLEWSPRSTYP*PPHPGSTP 309
           R+ +A+  TP P       P L+ +PR T P PP P S P
Sbjct: 243 RLDAARPTTPRPPSPLADAPRLD-APRPTTPKPPSPRSDP 281


>At1g58210.1 68414.m06610 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) {Petunia
            integrifolia}
          Length = 1246

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 394  SDNTQEDNNTLDNIRGHNNRMGSILGHNSSVDSTPGHNTG 513
            S +  E NN L++ +GH+  +      N SV +TP H  G
Sbjct: 924  SPHQGEGNNQLEHEQGHHETVSISPTSNFSVATTPHHQVG 963


>At5g02920.1 68418.m00235 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 345

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 215 VSDLADEMRH*VNIDQFLNTKNFVDYCMVLSDR*KNVIDSTPNLA 81
           +S+L DE+ H  +I  F+   N V    VLS R ++V   TP+L+
Sbjct: 30  ISNLPDEILH--HILSFIPETNLVIRTSVLSKRWRHVWSKTPHLS 72


>At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 262

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 346 GNCEPWYCPGCIPGYCPGAGAKGMC 272
           GNC  WYC  CI  Y   A     C
Sbjct: 87  GNCGHWYCGNCILQYWNYAAISRPC 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,599,836
Number of Sequences: 28952
Number of extensions: 238018
Number of successful extensions: 780
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)