Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0350.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    28   1.2  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    28   1.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.1  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    27   2.1  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   6.6  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   8.7  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   8.7  

>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 586 VLALPLVWPSQRRLANSIXNSPNYVTLPGVLWV-VSQELNIVHGLVQD 446
           V  LP+++PS  + AN   NS        VL + V  + +  +GLV+D
Sbjct: 544 VTLLPIIYPSLYKTANEHWNSTIQAIACNVLQIFVDMDADFFNGLVED 591


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 648 RQRSPISLNGCPSAFQ*LCSAFLLCPWSGPPSDVSLTPS 532
           R R P+++   PS    LCS  L   WS PP  +SL+ S
Sbjct: 111 RYRIPLNIIDNPS----LCSFTLPATWSEPPLQISLSTS 145


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -2

Query: 570 WSGPPSDVSLTPSGIAQTM*RCPVYCG*SARNSISSMAWSKTHLYRKTS 424
           W    S+++ + + +  +  RC  Y   S+R   S + W K+ L++K+S
Sbjct: 176 WKCIKSNLNTSSTNVLLSALRCAYYILGSSRLRNSELEWFKSFLFKKSS 224


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 649 KTTFSHF-LKWLSQRXPIVV*RVLALPLVWPSQRRLANSIXNSPNYV 512
           K TF  +  KW  Q  P+    V    +V  S+R LA  I NSP+YV
Sbjct: 70  KPTFEKYNAKW--QTGPLSCVSVFHKFVVIASERDLARKILNSPSYV 114


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 320 DIGQVLKAARLLCKPPQQVDFEDEQEMRF 406
           ++G+V ++  L+C  PQ  DF D Q + F
Sbjct: 349 EVGEVEQS--LVCNEPQSTDFNDIQRLLF 375


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 257 VPAKNPHAPPPVSVKTTGPVWD 322
           +P  +P  P  +  +T GP+WD
Sbjct: 671 IPRAHPQLPKNLLSQTAGPLWD 692


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 381 SRTNKKCVSFILLFMTFSDINVSWT--RPWTIL 473
           S      +SFI+LFMT+  + + W   R W+++
Sbjct: 373 SAVESAMISFIVLFMTWLKLLIPWRLFRLWSLI 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,353
Number of Sequences: 5004
Number of extensions: 58022
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)