Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0350.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               32   0.43 
SB_57322| Best HMM Match : DNA_pol_A (HMM E-Value=1.7e-07)             30   1.7  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_30524| Best HMM Match : TPR_2 (HMM E-Value=2.9e-36)                 28   7.0  
SB_30523| Best HMM Match : TPR_2 (HMM E-Value=9.9e-30)                 28   7.0  
SB_13133| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   9.2  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   9.2  

>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 639 SPISLNGCPSAFQ*LCSAFLLCPWSGPPSDVSLTPSGIAQTM*RCPVY 496
           +P+  +G PS     C A   CP S  P+   + PS +AQ++   P Y
Sbjct: 164 APVQFSGMPSQCAPSCMAASPCPSSCQPTCCGMNPSQLAQSVVPAPQY 211


>SB_57322| Best HMM Match : DNA_pol_A (HMM E-Value=1.7e-07)
          Length = 246

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +2

Query: 362 PPQQVDFED-EQEMRFVYSVIYDVFR 436
           PP +VDF++ E+  R VYSVIY V R
Sbjct: 5   PPVKVDFKERERTKRIVYSVIYGVGR 30


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 380 FEDEQEMRFVYSVIYDVFRYKCVL-DQAMDDIEFLADYPQYTGQRHIVWAI 529
           F+D+ E R  YS+ +   RY+ VL D  +D   F + +   T  +H V+ +
Sbjct: 109 FDDDLERRRAYSMAFGAKRYELVLEDVLLDSYFFSSFFKMETYHKHRVYVM 159


>SB_30524| Best HMM Match : TPR_2 (HMM E-Value=2.9e-36)
          Length = 451

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 569 QGQSKNALHNYWXALGQPFKEMGERCLGNXEXHFRSCHSARDSY 700
           QG+ ++A++NY  AL    K  GE C GN      + H  +  Y
Sbjct: 43  QGKYEDAMNNYQHALNLFQKTGGESCQGNAYHGMGNVHWFQGKY 86


>SB_30523| Best HMM Match : TPR_2 (HMM E-Value=9.9e-30)
          Length = 908

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 569 QGQSKNALHNYWXALGQPFKEMGERCLGNXEXHFRSCHSARDSY 700
           QG+ ++A++NY  AL    K  GE C GN      + H  +  Y
Sbjct: 8   QGKYEDAMNNYQHALNLFQKTGGESCQGNAYHGMGNVHWFQGKY 51


>SB_13133| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 395

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 313 WAGSFNGNRWWCMRILRRHQKL 248
           W G  NG   WC R+ RR + L
Sbjct: 341 WKGRLNGGAAWCARVRRRGEWL 362


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 313  WAGSFNGNRWWCMRILRRHQKL 248
            W G  NG   WC R+ RR + L
Sbjct: 4997 WKGRLNGGAAWCARVRRRGEWL 5018


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,943,602
Number of Sequences: 59808
Number of extensions: 456792
Number of successful extensions: 1113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)