Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0350.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical...    31   1.1  
Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z69661-5|CAA93495.2|  346|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical
           protein Y17G7B.11 protein.
          Length = 419

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 514 HSLGYSXWS*RDVAGRARPRAEQERATQLLEXAGTTI*GNGRTLSWEXRXTLSQLPFG 687
           H   ++ WS      R   R E+ER T+ +    T     G +++W+ R    +LP G
Sbjct: 43  HGGAHTHWSESRSTYRTNTRGERERFTENVNYNATINYLTGESIAWQSRDGTDRLPAG 100


>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 3   NQKNRFKIFSNYMKK*INKNTRFIKLFLLSVRMHRSHASKNQINNMRPMILEDRTAF 173
           N   RFK F   + +  N+N   +K+ L  +    SH+S+N++      I+   T F
Sbjct: 710 NATTRFKKFEELLSRLPNENRETLKMLLRHLNRVASHSSQNRMQQHNLAIVFGPTLF 766


>Z69661-5|CAA93495.2|  346|Caenorhabditis elegans Hypothetical
           protein F48F7.7 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = +1

Query: 514 HSLGYSXWS*RDVAGRARPRAEQERATQLLEXAGTTI*GNGRTLSWEXRXTLSQLPFG 687
           H   ++ WS  +   R     ++E  T+++  +      +G T++W  R    +LP G
Sbjct: 45  HGAAHTKWSEGERRYRTNCEGKEESYTEIVHYSAEVDYVSGETIAWSARNGTEKLPSG 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,218,330
Number of Sequences: 27780
Number of extensions: 339227
Number of successful extensions: 817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)