Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0350.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15010.3 68417.m02307 mitochondrial substrate carrier family ...    29   2.5  
At4g15010.2 68417.m02306 mitochondrial substrate carrier family ...    29   2.5  
At4g15010.1 68417.m02305 mitochondrial substrate carrier family ...    29   2.5  
At5g37950.1 68418.m04571 hypothetical protein                          29   4.3  
At3g42723.1 68416.m04459 hypothetical protein                          29   4.3  
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai...    29   4.3  
At3g48290.1 68416.m05270 cytochrome P450, putative very strong s...    28   7.6  
At1g64300.1 68414.m07287 protein kinase family protein contains ...    28   7.6  
At4g20930.1 68417.m03033 3-hydroxyisobutyrate dehydrogenase, put...    27   10.0 

>At4g15010.3 68417.m02307 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 378

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 348 VFSASHHSKSISRTNKKCVSFILLFMTFSDIN-VSWTRPWTILSSWLTTHSTPGNVT*FG 524
           V +A+ HS   +RT  +CV  IL   T  +   + W +P   L  W   H T  N+   G
Sbjct: 292 VAAAASHSFDTARTRAQCV--ILPKYTAKERKFLKWNKPGKRLERWTGIHPTDRNLLFRG 349

Query: 525 LFXMELAR 548
           +  M +AR
Sbjct: 350 I-GMRMAR 356


>At4g15010.2 68417.m02306 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 378

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 348 VFSASHHSKSISRTNKKCVSFILLFMTFSDIN-VSWTRPWTILSSWLTTHSTPGNVT*FG 524
           V +A+ HS   +RT  +CV  IL   T  +   + W +P   L  W   H T  N+   G
Sbjct: 292 VAAAASHSFDTARTRAQCV--ILPKYTAKERKFLKWNKPGKRLERWTGIHPTDRNLLFRG 349

Query: 525 LFXMELAR 548
           +  M +AR
Sbjct: 350 I-GMRMAR 356


>At4g15010.1 68417.m02305 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 378

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 348 VFSASHHSKSISRTNKKCVSFILLFMTFSDIN-VSWTRPWTILSSWLTTHSTPGNVT*FG 524
           V +A+ HS   +RT  +CV  IL   T  +   + W +P   L  W   H T  N+   G
Sbjct: 292 VAAAASHSFDTARTRAQCV--ILPKYTAKERKFLKWNKPGKRLERWTGIHPTDRNLLFRG 349

Query: 525 LFXMELAR 548
           +  M +AR
Sbjct: 350 I-GMRMAR 356


>At5g37950.1 68418.m04571 hypothetical protein
          Length = 351

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 272 PHAPPPVSVKTTGPVWDIGQVLKAARLLCKPPQQVDFEDEQEMRFVYSVIYDVFRY 439
           P + P   +KT GP+W I ++ K   +  K         +QE   +  VIYD F Y
Sbjct: 40  PESLPASDLKTLGPIWFIIKLNKECEISFKKCLGQFLLQQQEE--IACVIYDEFMY 93


>At3g42723.1 68416.m04459 hypothetical protein
          Length = 806

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
 Frame = +2

Query: 389 EQEMRFVYSVIYDVFRYKCVLDQAMDDIEFLADYPQYTGQRHIVWAIPDGVSETSLGGPD 568
           +QE+ F Y +  DV R    +   ++DI+ + DY  +  +R +V  I      + LG  +
Sbjct: 477 QQEVSFSYRLASDVKRSCQEISLRINDIDIVEDYCVWDLKRDVVDVILGYEWLSKLGETE 536

Query: 569 ---QGQSKNALHNY-WXALGQPFKEM 634
              Q QS + +HN  W  L    K++
Sbjct: 537 VNWQNQSFSFIHNQDWVTLCPKNKDL 562


>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region
          Length = 653

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -3

Query: 698 TNP*PNGSCESVXLCSQDNVLPFP*MVVPAXSNSCVARSCSALGLALP 555
           T P P   C S      D+V+P         S+  VAR+CS    ALP
Sbjct: 405 TQPTPPKCCVSFSSYFNDSVIPCKTCACGGCSSDRVARTCSTTSPALP 452


>At3g48290.1 68416.m05270 cytochrome P450, putative very strong
           similarity to Cytochrome P450 71A24
           (SP:Q9STK9)[Arabidopsis thaliana];
          Length = 488

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
 Frame = +2

Query: 323 IGQVLKAARLLCKPPQQVDFEDEQEMRFVYSVIYDVFRYK-----CVLDQAMDDIEFLAD 487
           + ++ +  R++CK    V  +D Q+M+++ +VI +  R        V  ++  D++ L D
Sbjct: 316 LDRLQEEVRMVCKDKSGVSEDDLQDMKYLKAVIKETLRLHPPLPLMVPHESTHDVK-LRD 374

Query: 488 YPQYTGQRHIV--WAIPDGVSETSLGGPDQGQSKNALH 595
           Y    G   ++  WAI     E +  GPD  + +   H
Sbjct: 375 YHIPAGTHVMINAWAIG---REAATWGPDAEEFRPERH 409


>At1g64300.1 68414.m07287 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 717

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 593 HNYWXALGQPFKEMGERCLGNXEXHFRSCHSARD 694
           H  W AL QP +E+  R     E + R+C S +D
Sbjct: 59  HTKWRALEQPLREL-YRVFKEGEMYVRNCMSNKD 91


>At4g20930.1 68417.m03033 3-hydroxyisobutyrate dehydrogenase,
           putative similar to SP|P29266 3-hydroxyisobutyrate
           dehydrogenase, mitochondrial precursor (EC 1.1.1.31)
           {Rattus norvegicus}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 347

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 564 GPPSDVSLTPSGIAQTM*RCPVYCG*SARNSISSM 460
           G P D  L    I Q+M R  +YCG S   S + +
Sbjct: 186 GGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKI 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,306,716
Number of Sequences: 28952
Number of extensions: 315233
Number of successful extensions: 814
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)