Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0348.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    32   0.069
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    28   1.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.0  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.4  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   6.0  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   7.9  
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.9  

>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 514 LFTHLDESERADMFDAMFPVQCLPGETVIRQGDEGDKLFILID 642
           + + LD+ +R  + DA+  V    G  VIRQGD G++ +++ D
Sbjct: 278 ILSSLDKYQRQKIADALQTVVYQAGSIVIRQGDIGNQFYLIED 320


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 586 GETVIRQGDEGDKLFILID 642
           G T++RQGD  D L+ +ID
Sbjct: 540 GTTIVRQGDHADGLYYIID 558


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 608  PCRITVSPGRHWTGNIASNISALSDSS 528
            P   TV+PGR W  N+A+ I A++ +S
Sbjct: 2063 PAFDTVAPGRVWITNVAAWIYAIASAS 2089


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 338 EADGELSPLPVPGGQLPRRRGGISAEPVTEEDATSYVKKVVPKDYK 475
           E +  ++ LP+P G     R   S+ P+ E ++ S +K  +  D+K
Sbjct: 498 EIEKPIASLPLPNGNDTISRSSESSSPINESESNSLLK--LQSDFK 541


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +3

Query: 291 RTGQSCSSCSCCFLRVKQMVN--SHPYLYQGDNYQGDAGV*VQSP*PKKMLLVMLKRWCQ 464
           RTG+ C S +C F    Q     S PY    +N +G   V ++   P K     L   C 
Sbjct: 17  RTGRKCQSRNCFFSHDFQNSTKISPPY---SENVEGYPKVKIEKSLPYKYDNCKLS-ICV 72

Query: 465 KITKQWVPYHAL 500
            I    +PYH++
Sbjct: 73  PIVTTCIPYHSV 84


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 440 SYVKKVVPKDYKTMGALSRAIASMYCLHIWMNLRGLICLMLCFLSNVFL 586
           ++ KK     Y T  +++  I   + L+IW  LRG + L+   L NV L
Sbjct: 781 NFAKKENAWKYTTTSSIN--IVGRHVLNIWRILRGEVNLLNYSLENVVL 827


>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 444 MLKRWCQKITKQWVPYHALLHQCIVYTF 527
           +L RWC       VP + LL +C++Y F
Sbjct: 7   ILIRWCD------VPVYILLRKCVIYKF 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,975
Number of Sequences: 5004
Number of extensions: 51709
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)