Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0348.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1342 + 32775582-32775796,32776589-32776794,32777356-327774... 32 0.38
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834... 30 1.5
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234... 30 1.5
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 30 2.0
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 30 2.0
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 29 2.7
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 28 6.2
02_01_0408 - 2972240-2975380 28 6.2
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 28 8.2
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 28 8.2
>04_04_1342 +
32775582-32775796,32776589-32776794,32777356-32777492,
32778758-32778860,32778961-32779079,32779282-32779346,
32779426-32779642,32779713-32779934
Length = 427
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -3
Query: 423 VTGSALIPPRLLGSCPPGTGRG 358
VT S L PPRL SCP GRG
Sbjct: 2 VTASGLAPPRLAVSCPRAAGRG 23
>12_02_0667 +
21682386-21682944,21683042-21683201,21683419-21683467,
21683570-21683683,21683794-21684294,21684594-21684980,
21685074-21685172,21685380-21685478,21685817-21685890,
21686387-21687023
Length = 892
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 475 FVIFW--HHLFNITSSIFFGYGLCTYTPASPW*LSPW 371
F +FW HHLF I F +G+C Y + W + W
Sbjct: 556 FNMFWYSHHLFVIVYIAFVVHGVCLYINRTWWKQTTW 592
>04_04_0919 -
29422003-29422267,29422411-29422660,29423163-29423481,
29423625-29424794,29424879-29425388,29425449-29425607
Length = 890
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 252 LIVFTSTFPEIRTRTGQSCSSCSCCFLRVKQMVNSHPYLYQGDNYQGDA 398
++V T T P R + + + SCC VK +VN +L + GDA
Sbjct: 134 IVVLTDTVP--RRPSDLASNGRSCCLAHVKDVVNRRTFLIRAAKKIGDA 180
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 23 VHREFKFLRYKILTVVTCCF-VKFMLIRLPIGCNKNFK 133
V R + L I+++ CC+ K ++I+LPIG NF+
Sbjct: 186 VERALRVLDGAIMSICQCCWGAKPLVIQLPIGSEDNFQ 223
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 395 RGGISAEPVTEEDATSYVKKVVPKDYKTMGALSRAIASMYCLHI 526
R EP+ EED ++ + K +P+ + G L S YC HI
Sbjct: 284 RKAAGEEPLPEEDPSNPIFKPIPEPSRLEGYLVTNQISSYCNHI 327
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 514 LFTHLDESERADMFDAMFPVQCLPGETVIRQGDEGDKLFIL 636
LF L +S+ + D M V+ G+ V++QG EG+ +++
Sbjct: 490 LFRKLTDSQCHVLLDCMQRVEVKAGDIVVQQGGEGECFYVV 530
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/61 (21%), Positives = 28/61 (45%)
Frame = +1
Query: 514 LFTHLDESERADMFDAMFPVQCLPGETVIRQGDEGDKLFILIDSRRG*GFSVKRAETGWT 693
LF H+D+ ++ D + + GE ++R+GD ++ ++ ++ T W
Sbjct: 495 LFHHMDDLVLENICDRVKSLIFPKGEIIVREGDPVQRMLFIVRGHLQCSQVMRNGATSWC 554
Query: 694 T 696
T
Sbjct: 555 T 555
>02_01_0408 - 2972240-2975380
Length = 1046
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 681 FRPFHGEPSTSPGVN*YKKFVAFIPLSNNSFTRKT 577
+ F+GE S+ G K+++F+ LSNNSFT T
Sbjct: 383 YNNFYGELSSEIGK---LKYLSFLSLSNNSFTNIT 414
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +2
Query: 494 RAIASMYCLHIWMNL--RGLICLMLCFLSNVFLV 589
+A A +YC+ + +NL R L+ L+L F+ VF+V
Sbjct: 498 KAFAFLYCVKVMLNLQFRMLMGLVLAFMFVVFIV 531
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -2
Query: 475 FVIFW--HHLFNITSSIFFGYGLCTY 404
F FW HHLF I ++ F +G C Y
Sbjct: 534 FNAFWFTHHLFVIVYTLLFVHGTCLY 559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,054,628
Number of Sequences: 37544
Number of extensions: 326675
Number of successful extensions: 912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -