Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0348.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26)          84   9e-17
SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)          37   0.018
SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.032
SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_23938| Best HMM Match : KCl_Cotrans_1 (HMM E-Value=5.7)             29   3.6  
SB_24923| Best HMM Match : rve (HMM E-Value=1.5e-11)                   29   4.8  
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 28   6.3  
SB_24760| Best HMM Match : PT (HMM E-Value=0.17)                       28   6.3  
SB_24361| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-40)                 28   6.3  

>SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26)
          Length = 370

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 43/96 (44%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
 Frame = +2

Query: 176 YIQTHNIQLLLKDCIVQLCVNKPENPDRFYVNISRN*NE-NRSKXXXXXXXXSEGEADGE 352
           Y++ HNIQ +LKDCIVQLC++KPENP +F+        + +  K        +E E   E
Sbjct: 20  YVEKHNIQGVLKDCIVQLCISKPENPYKFFREYFEKLEKGHEEKKEETARLEAEPEQRAE 79

Query: 353 LSPLPVPGGQLPR-RRGGISAEPVTEEDATSYVKKV 457
           +   P P     R RRG +SA P+TE++ATSYVKKV
Sbjct: 80  VEEHPPPSKPFQRQRRGAVSAAPITEDEATSYVKKV 115



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 526 LDESERADMFDAMFPVQCLPGETVIRQGDEGDKLFILID 642
           LD+ ER  + DA+ P Q   G+ V+ QG+ GD+ FI+++
Sbjct: 248 LDKWERLTVADALEPTQFQDGDDVVVQGEHGDEFFIIVE 286


>SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)
          Length = 373

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 3/155 (1%)
 Frame = +2

Query: 203 LLKDCIVQLCVNKPENPDRF---YVNISRN*NENRSKXXXXXXXXSEGEADGELSPLPVP 373
           LL++ +V+     PE+   F   Y N+ +   E ++          E E   +L+P   P
Sbjct: 16  LLEEFVVKCIQENPEDIVEFAADYFNMLKRFKEKKAASKQAAQSKKESEDKDDLAPAEQP 75

Query: 374 GGQLPRRRGGISAEPVTEEDATSYVKKVVPKDYKTMGALSRAIASMYCLHIWMNLRGLIC 553
             +   RR  +SAEP    +   +  K  PK  +    L + +  ++    +      + 
Sbjct: 76  IIKGRSRRAAVSAEPYNPNENADFKAKFHPKSEEQRNHLKKKLLELWLFEKFHREDLDVI 135

Query: 554 LMLCFLSNVFLVKLLFDKGMKATNFLY*LTPGEVE 658
           L   F   V   +++   G +  NF Y +  GE +
Sbjct: 136 LDSMFEKKVSPEEIIIKVGDEGDNF-YVINTGEYD 169



 Score = 31.9 bits (69), Expect = 0.51
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 514 LFTHLDESERADMFDAMFPVQCLPGETVIRQGDEGDKLFIL 636
           LF      +   + D+MF  +  P E +I+ GDEGD  +++
Sbjct: 123 LFEKFHREDLDVILDSMFEKKVSPEEIIIKVGDEGDNFYVI 163



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 454 GGAKRLQNNGCLITRYCINVLFTHLDESERADMFDAMFPVQCLPGETVIRQGDE 615
           GGA+R +     + +  +++L   L   E   + DA++P +   GE VIR+G+E
Sbjct: 229 GGAQRRRERNIELLK-SVSIL-KELKPDELDKVSDALYPKEFKDGEAVIREGNE 280


>SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +1

Query: 511 VLFTHLDESERADMFDAMFPVQCLPGETVIRQGDEGDKLFIL 636
           +LF +L + +  ++ DAMF  +   G+ +I QGD+GD  +++
Sbjct: 142 LLFKNLAKEQLNEVLDAMFERKTQAGDHIIDQGDDGDNFYVI 183


>SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 568 PVQCLPGETVIRQGDEGDKLFIL 636
           PV C PG+ + RQG++G +++I+
Sbjct: 542 PVICSPGDFICRQGEKGREMYIV 564


>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 647 LESINIKSLSPSSPCRITVSPGRHW-TGNIASNISALSDSSKCVN 516
           ++  + K+L+  S C++   P   W +GN AS   A+ +SSKC++
Sbjct: 456 IKGSHCKALTSDSSCKL--DPACGWCSGNPASKCFAVQESSKCLS 498


>SB_23938| Best HMM Match : KCl_Cotrans_1 (HMM E-Value=5.7)
          Length = 320

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 236 LHITERCNLSATIECYEF--EYSLHIHVNIVLLPFLF*SFCYN 114
           +H+   C     + C++F  ++   IH+ + +L  +F S+C+N
Sbjct: 197 IHLAPYCGYEFKVICWDFNNDFKEAIHMAVDMLVHVFRSYCFN 239


>SB_24923| Best HMM Match : rve (HMM E-Value=1.5e-11)
          Length = 1445

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 431 DATSYVKKVVPKDYKTMGALSRAIASMYCLHIWM 532
           D T  V+  +  DYK +  +S+ I    C H+W+
Sbjct: 88  DETIKVRLALESDYKQVVGMSKGIYLPKCYHVWL 121


>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 1413

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -1

Query: 176  SLHIHVNIVLL---PFLF*SFCYNQLV 105
            S+HI+  I LL   PFL  SFCY Q++
Sbjct: 1155 SIHIYCTITLLGILPFLILSFCYFQIL 1181


>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
          Length = 422

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -3

Query: 687 PGFRPFHG---EPSTSPGVN*YKKFVAFIPLSNNSFTRKTLDRKHSIKHISP 541
           PG  P HG    PS+ PGVN    F  F+ L +NS      D    +K+  P
Sbjct: 92  PGPHPSHGPGPHPSSGPGVN---WFGRFLRLLHNSVKTVKADEHPDLKYREP 140


>SB_24361| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-40)
          Length = 430

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -1

Query: 176 SLHIHVNIVLL---PFLF*SFCYNQLV 105
           S+HI+  I LL   PFL  SFCY Q++
Sbjct: 278 SIHIYCTITLLGILPFLILSFCYFQIL 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,849,373
Number of Sequences: 59808
Number of extensions: 382488
Number of successful extensions: 843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)