Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0348.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22920.1 68417.m03310 expressed protein                             31   0.56 
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica...    30   1.7  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    28   6.8  
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot...    28   6.8  
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot...    28   6.8  
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH...    27   9.0  
At2g20680.1 68415.m02428 glycosyl hydrolase family 5 protein / c...    27   9.0  

>At4g22920.1 68417.m03310 expressed protein
          Length = 268

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 264 TSTFPEIRTRTGQSCSSCSCCFLRVKQMVNSHPYLYQGDN-YQGDAGV*VQSP*PKKM 434
           T T PE R         CSCCF  V  +  SH    +G N Y G     + +P P+K+
Sbjct: 216 TETLPEARC-----ADECSCCFPTVSSIPWSHSLSNEGVNGYSGTQTEGIATPNPEKL 268


>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
            domain-containing protein / F-box family protein similar
            to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
            pombe}; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00646: F-box domain
          Length = 1378

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +2

Query: 464  KDYKTMGALSRAIASMYCLHIWMNLRGLICLMLCFLSNVFLVKLLFDKGMK 616
            + Y  M AL+       C+ + M+  G + L L F+++VFL++ ++DK ++
Sbjct: 1228 QSYNKMKALAMFQNDADCMALLMDGSGALGLDLSFVTHVFLMEPIWDKSLE 1278


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -2

Query: 475 FVIFW--HHLFNITSSIFFGYGLCTYTPASPW 386
           F  FW  HHLF I  S+   +G   Y    PW
Sbjct: 522 FNAFWYSHHLFVIVYSLLVVHGFYVYLIIEPW 553


>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 766

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/67 (23%), Positives = 26/67 (38%)
 Frame = +2

Query: 254 DRFYVNISRN*NENRSKXXXXXXXXSEGEADGELSPLPVPGGQLPRRRGGISAEPVTEED 433
           DRF  N  +  ++ + K        +E E + +    P P      R GG +A+      
Sbjct: 664 DRFVTNYKKGLSKKKRKAELAIQARAEAERNSQQQMAPAPAAHEFSREGGNTAKKTLPTP 723

Query: 434 ATSYVKK 454
             S V+K
Sbjct: 724 LPSQVEK 730


>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 766

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/67 (23%), Positives = 26/67 (38%)
 Frame = +2

Query: 254 DRFYVNISRN*NENRSKXXXXXXXXSEGEADGELSPLPVPGGQLPRRRGGISAEPVTEED 433
           DRF  N  +  ++ + K        +E E + +    P P      R GG +A+      
Sbjct: 664 DRFVTNYKKGLSKKKRKAELAIQARAEAERNSQQQMAPAPAAHEFSREGGNTAKKTLPTP 723

Query: 434 ATSYVKK 454
             S V+K
Sbjct: 724 LPSQVEK 730


>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
            identical to SP|Q9SMV7 DNA mismatch repair protein MSH6-2
            (AtMsh6-2) (MutS homolog 7) {Arabidopsis thaliana}; GC
            donor splice site at exon 11
          Length = 1109

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 505  INVLFTHLDESERADMFDAMFPVQCLPGETVIRQGDEGDKLFILIDSRRG 654
            ++ +FT L  S+R    ++ F V+C    +V++   + D L IL +  RG
Sbjct: 889  VDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQ-DSLVILDELGRG 937


>At2g20680.1 68415.m02428 glycosyl hydrolase family 5 protein /
           cellulase family protein similar to (1-4)-beta-mannan
           endohydrolase [Coffea arabica] GI:10178872; contains
           Pfam profile PF00150: Cellulase (glycosyl hydrolase
           family 5)
          Length = 433

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 617 PSSPCRITVSPGRHWTGNIASNISALSDS 531
           PSSP ++TV+P R W   + S+    SDS
Sbjct: 257 PSSPKKLTVNPER-WASELGSDFVRNSDS 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,923,978
Number of Sequences: 28952
Number of extensions: 269857
Number of successful extensions: 753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)