Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0344.Seq
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              42   7e-04
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)                   42   7e-04
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)                  42   7e-04
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                42   7e-04
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           42   7e-04
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)                       42   7e-04
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   7e-04
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          42   7e-04
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)                    40   0.002
SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)                    38   0.011
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)                     37   0.015
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.015
SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.060
SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)                 30   1.7  
SB_50933| Best HMM Match : Laminin_EGF (HMM E-Value=0.0069)            30   2.2  
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_24487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 10  RRPVNCNTTHYRANW 24


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 66  RRPVNCNTTHYRANW 80


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 634 RRPVNCNTTHYRANW 648


>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 45  RRPVNCNTTHYRANW 59


>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
          Length = 257

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 7   RRPVNCNTTHYRANW 21


>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
          Length = 117

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 47  RRPVNCNTTHYRANW 61


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729  RRPVNCNTTHYRANW 685
            RRPVNCNTTHYRANW
Sbjct: 1885 RRPVNCNTTHYRANW 1899


>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 45  RRPVNCNTTHYRANW 59


>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 7   RRPVNCNTTHYRANW 21


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 39  RRPVNCNTTHYRANW 53


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 88  RRPVNCNTTHYRANW 102


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 66  RRPVNCNTTHYRANW 80


>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
          Length = 281

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 77  RRPVNCNTTHYRANW 91


>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 53  RRPVNCNTTHYRANW 67


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRANW 685
           RRPVNCNTTHYRANW
Sbjct: 77  RRPVNCNTTHYRANW 91


>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
          Length = 142

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = +1

Query: 643 SSISFVSAIRGGRYPIRPIVSRITIHWPS 729
           SS S  +A  GG  PIRPIVSRITIHWP+
Sbjct: 26  SSCSRAAATDGGA-PIRPIVSRITIHWPA 53


>SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)
          Length = 131

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +1

Query: 643 SSISFVSAIRGGRYPIRPIVSRITIHWPS 729
           S+ S  +A  GG  PIRPIVS ITIHWPS
Sbjct: 28  STSSRAAATVGGA-PIRPIVSHITIHWPS 55


>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
          Length = 237

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRAN 688
           RRPVNCNTTHYRAN
Sbjct: 84  RRPVNCNTTHYRAN 97


>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -2

Query: 729 RRPVNCNTTHYRAN 688
           RRPVNCNTTHYRAN
Sbjct: 27  RRPVNCNTTHYRAN 40


>SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +1

Query: 646 SISFVSAIRGGRYPIRPIVSRITIHWPS 729
           S S ++A       IRPIVSRITIHWPS
Sbjct: 4   STSSIAAGIAVELAIRPIVSRITIHWPS 31


>SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 688 IRPIVSRITIHWPS 729
           +RP+VSRITIHW S
Sbjct: 33  LRPVVSRITIHWTS 46


>SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
          Length = 338

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 225 RFAYFIKLYTSMLHEQI*FKFSTMSFNFSLCFYI*LNKAI*TVYTCNVNY-PCFCFNSVF 49
           R A+  +L ++ LHE++ +K   +S    L FY+  +     V  C +N  P  C N  F
Sbjct: 242 RRAWMRRLTSNSLHERVNYKVFKISLAIVLAFYLCYSCYWLQVTLCTLNEPPRLCANQTF 301

Query: 48  YF 43
            F
Sbjct: 302 RF 303


>SB_50933| Best HMM Match : Laminin_EGF (HMM E-Value=0.0069)
          Length = 233

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 246 FYH*KIKLGSVLSTACRRGCRTTAGSCYGRTAASCRCCGCSW 371
           +Y  K   G +   AC   C    G C+G TA  C  C   W
Sbjct: 53  YYEDKGDDGKMSCKACHESC---FGGCHGGTAKDCSACKSGW 91


>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/44 (27%), Positives = 14/44 (31%)
 Frame = +3

Query: 294 RRGCRTTAGSCYGRTAASCRCCGCSWPAFLAVAAISISPICSTF 425
           R  C      C     + C CC C  P       I  S +C  F
Sbjct: 217 RADCYVNLCCCVTCRCSVCTCCPCDCPCLQCAPCIVFSALCCPF 260


>SB_24487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +1

Query: 694 PIVSRITIHWPS 729
           P +SRITIHWPS
Sbjct: 77  PYMSRITIHWPS 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,011,944
Number of Sequences: 59808
Number of extensions: 170218
Number of successful extensions: 481
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)