Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0343.Seq
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 124 2e-29
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.40
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 29 0.94
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.2
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.2
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.2
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.8
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 8.7
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 8.7
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 124 bits (298), Expect = 2e-29
Identities = 58/87 (66%), Positives = 70/87 (80%)
Frame = +1
Query: 247 VGDKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILK 426
+ + + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++
Sbjct: 101 IANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVS 160
Query: 427 PGDKVGASEATLLNMLNISPFSYGLVV 507
KVG SEATLLNMLNISPF+YG+ V
Sbjct: 161 KDAKVGPSEATLLNMLNISPFTYGMDV 187
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/82 (50%), Positives = 62/82 (75%)
Frame = +2
Query: 5 DEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPH 184
++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +++ P LE+LLP
Sbjct: 20 EKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPV 79
Query: 185 IKGNVGFVFTRGDLVEVRDKLL 250
++GNVGFVFT DL EVR+ ++
Sbjct: 80 VRGNVGFVFTNADLKEVRETII 101
Score = 53.6 bits (123), Expect = 3e-08
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +3
Query: 513 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSI 662
+YD G +F+PEILD+ EDL + + + A+SL YPTI S HS+
Sbjct: 190 IYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSV 239
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 99 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 206
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 28.7 bits (61), Expect = 0.94
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 558 KPEDLRAKFQAG-VANVAALSLAIGYPTIASAPHSIGQWFQEP 683
KP+ L + +AG +A+VA+LS A GY ++S I W EP
Sbjct: 570 KPDYLSVEDRAGLIADVASLSRA-GYGKVSSTLDLIKTWKDEP 611
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 404 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 279
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 165 RAGLLSRWSLMALRIIVFFPMSTILEPR 82
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 243 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 118
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 411 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 289
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 17 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 163
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 411 IVDDFNSTL*NLGRDRKSL 355
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,401
Number of Sequences: 5004
Number of extensions: 67949
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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