Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0343.Seq
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 116 2e-26
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 116 2e-26
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 116 2e-26
06_01_0080 + 644021-645463 33 0.32
09_04_0351 + 16904075-16904738,16906285-16906366,16906533-169066... 32 0.56
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 29 3.9
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 5.2
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 28 6.9
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 28 6.9
04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995... 28 9.1
03_06_0005 + 30952287-30952762,30952973-30953282 28 9.1
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 116 bits (280), Expect = 2e-26
Identities = 54/85 (63%), Positives = 67/85 (78%)
Frame = +1
Query: 256 KVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 435
KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GD
Sbjct: 109 KVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168
Query: 436 KVGASEATLLNMLNISPFSYGLVVS 510
KVG+SE+ LL L I PFSYGLV++
Sbjct: 169 KVGSSESALLAKLGIRPFSYGLVIT 193
Score = 100 bits (240), Expect = 1e-21
Identities = 50/88 (56%), Positives = 64/88 (72%), Gaps = 2/88 (2%)
Frame = +2
Query: 2 LDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKL 175
LDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L
Sbjct: 22 LDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLEL 81
Query: 176 LPHIKGNVGFVFTRGDLVEVRDKLLETK 259
+P + GNVG +FT+GDL EVR+++ + K
Sbjct: 82 MPLLVGNVGLIFTKGDLKEVREEVAKYK 109
Score = 72.1 bits (169), Expect = 4e-13
Identities = 31/48 (64%), Positives = 41/48 (85%)
Frame = +3
Query: 513 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPH 656
VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH
Sbjct: 195 VYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPH 242
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 116 bits (280), Expect = 2e-26
Identities = 54/85 (63%), Positives = 67/85 (78%)
Frame = +1
Query: 256 KVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 435
KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GD
Sbjct: 109 KVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168
Query: 436 KVGASEATLLNMLNISPFSYGLVVS 510
KVG+SE+ LL L I PFSYGLV++
Sbjct: 169 KVGSSESALLAKLGIRPFSYGLVIT 193
Score = 100 bits (240), Expect = 1e-21
Identities = 50/88 (56%), Positives = 64/88 (72%), Gaps = 2/88 (2%)
Frame = +2
Query: 2 LDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKL 175
LDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L
Sbjct: 22 LDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLEL 81
Query: 176 LPHIKGNVGFVFTRGDLVEVRDKLLETK 259
+P + GNVG +FT+GDL EVR+++ + K
Sbjct: 82 MPLLVGNVGLIFTKGDLKEVREEVAKYK 109
Score = 72.1 bits (169), Expect = 4e-13
Identities = 31/48 (64%), Positives = 41/48 (85%)
Frame = +3
Query: 513 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPH 656
VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH
Sbjct: 195 VYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPH 242
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 116 bits (280), Expect = 2e-26
Identities = 54/85 (63%), Positives = 67/85 (78%)
Frame = +1
Query: 256 KVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 435
KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GD
Sbjct: 109 KVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168
Query: 436 KVGASEATLLNMLNISPFSYGLVVS 510
KVG+SE+ LL L I PFSYGLV++
Sbjct: 169 KVGSSESALLAKLGIRPFSYGLVIT 193
Score = 101 bits (241), Expect = 8e-22
Identities = 50/88 (56%), Positives = 64/88 (72%), Gaps = 2/88 (2%)
Frame = +2
Query: 2 LDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKL 175
LDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L
Sbjct: 22 LDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLEL 81
Query: 176 LPHIKGNVGFVFTRGDLVEVRDKLLETK 259
+P + GNVG +FT+GDL EVR+++ + K
Sbjct: 82 MPLLVGNVGLIFTKGDLKEVREEVAKYK 109
Score = 70.9 bits (166), Expect = 1e-12
Identities = 30/48 (62%), Positives = 41/48 (85%)
Frame = +3
Query: 513 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPH 656
VYDSG++F+PE+LD+ +DL KF +GV+ VA++SLAI YPTIA+APH
Sbjct: 195 VYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPH 242
>06_01_0080 + 644021-645463
Length = 480
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 411 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGND 304
I+D N N R K++EERGLL+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>09_04_0351 +
16904075-16904738,16906285-16906366,16906533-16906697,
16906811-16906929,16906930-16907156
Length = 418
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 212 TRGDLVEVRDKLLETKSKLQLVLVPLPHCQSSFPPTT 322
T DL+ V D + +++VPLP C SSFP T
Sbjct: 195 TATDLMSVNDMATPELAAGDIIVVPLPACTSSFPAFT 231
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +2
Query: 74 ISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDK 244
I L + L+ + ++ L N AL+KL LPH ++GN+GF+ + + ++ D
Sbjct: 372 IGLLQKLVYLLLSANQLSGSVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDL 431
Query: 245 LLETKS 262
+L+ S
Sbjct: 432 ILDHNS 437
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 214 GEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 119
G HEA+ L W+ + GW + F GFA H
Sbjct: 189 GNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 608 SYISNSSLELGTEIFWFDVQNFRCKNSSRIIYLLTTR 498
+YISN + G F F+ Q C S I ++TTR
Sbjct: 690 NYISNKDMRFGLYEFIFNPQCIPCHASGDFIIVVTTR 726
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -2
Query: 419 MCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLSPTVC 240
+CT L I+ L+G+ +A+ V SGP P G T D + G T P C
Sbjct: 330 ICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGDLLRASGMEFGTTTGRPRRC 389
>04_03_0768 -
19396146-19396607,19397855-19398175,19398424-19399569,
19400073-19400855,19402114-19402149
Length = 915
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 279 RTSWSLDFVSNSLSRTSTRSPRVNTKPTLPLM 184
RTS L S+ S TS + P V TK T PL+
Sbjct: 703 RTSGELASSSHKSSATSAQKPAVATKQTSPLL 734
>03_06_0005 + 30952287-30952762,30952973-30953282
Length = 261
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 194 NVGFVFTRGDLVEVRDKLLETKSKLQLVLVPLPHCQSSFPPTTPAS 331
++ FVFT L + LL + ++P+P+ + FP TPAS
Sbjct: 128 SLSFVFTSSKL---KHYLLYDAIHASMSMIPIPNWKPRFPKETPAS 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,250,924
Number of Sequences: 37544
Number of extensions: 504003
Number of successful extensions: 1409
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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