Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0343.Seq
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 134 7e-32
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 34 0.14
SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6) 29 4.0
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 29 5.3
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 7.0
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10) 28 9.3
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 134 bits (324), Expect = 7e-32
Identities = 62/86 (72%), Positives = 72/86 (83%)
Frame = +2
Query: 2 LDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLP 181
LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+ HL+NNP LEKLLP
Sbjct: 3 LDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKLLP 62
Query: 182 HIKGNVGFVFTRGDLVEVRDKLLETK 259
HIKGN+GFVFT+ DL +VR ++E K
Sbjct: 63 HIKGNIGFVFTKEDLADVRKIIMENK 88
Score = 100 bits (239), Expect = 1e-21
Identities = 45/65 (69%), Positives = 56/65 (86%)
Frame = +1
Query: 253 DKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPG 432
+KV APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH++K
Sbjct: 87 NKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKD 146
Query: 433 DKVGA 447
+K+ A
Sbjct: 147 EKLKA 151
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.1 bits (77), Expect = 0.061
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 110 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 226
K T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -1
Query: 411 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 289
I+D NS + R K+LEERGLL+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
Length = 383
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 270 WSLDFVSNSLSRTSTRSPRVNTKPTLP 190
WSL V +S S T T+SP ++T T P
Sbjct: 196 WSLRTVQHSHSHTGTKSPMLSTHGTTP 222
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 443 PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 327
P P F+ C +L+ ++ ++ + RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 256 KVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKP 429
++ +PA +P S+ TGL P S Q LS+ T + ++ D+ P
Sbjct: 2071 RIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNSTP 2130
Query: 430 GDK 438
G K
Sbjct: 2131 GKK 2133
>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 270 WSLDFVSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFF 109
W LDFV +SLS +++ N T L+ + + WSL I F
Sbjct: 72 WQLDFVPSSLSPKKSQNRTANAAVTAQLIYRRNGCYSQSTKTWSLSKTETITSF 125
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 10 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 114
VPKMFH RG+ T+A P + T +L+ R G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891
>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
Length = 543
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -2
Query: 452 SEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMT 303
S P L P S I+P EILVG+ER +K V G L MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,776,455
Number of Sequences: 59808
Number of extensions: 550179
Number of successful extensions: 1542
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -