Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0343.Seq
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 115 4e-26
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 115 4e-26
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 115 4e-26
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 33 0.15
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.5
At5g13260.1 68418.m01523 expressed protein 28 5.8
At2g20340.1 68415.m02375 tyrosine decarboxylase, putative simila... 28 5.8
At1g33410.1 68414.m04136 expressed protein 28 5.8
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 115 bits (276), Expect = 4e-26
Identities = 55/84 (65%), Positives = 65/84 (77%)
Frame = +1
Query: 256 KVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 435
KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GD
Sbjct: 108 KVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGD 167
Query: 436 KVGASEATLLNMLNISPFSYGLVV 507
KVG+SEA LL L I PFSYGLVV
Sbjct: 168 KVGSSEAALLAKLGIRPFSYGLVV 191
Score = 99 bits (238), Expect = 2e-21
Identities = 46/88 (52%), Positives = 66/88 (75%), Gaps = 2/88 (2%)
Frame = +2
Query: 2 LDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKL 175
+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N A+ L
Sbjct: 21 IDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNL 80
Query: 176 LPHIKGNVGFVFTRGDLVEVRDKLLETK 259
LP ++GNVG +FT+GDL EV +++ + K
Sbjct: 81 LPLLQGNVGLIFTKGDLKEVSEEVAKYK 108
Score = 63.3 bits (147), Expect = 2e-10
Identities = 24/48 (50%), Positives = 39/48 (81%)
Frame = +3
Query: 513 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPH 656
VYD+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT+A+APH
Sbjct: 194 VYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPH 241
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 115 bits (276), Expect = 4e-26
Identities = 55/84 (65%), Positives = 65/84 (77%)
Frame = +1
Query: 256 KVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 435
KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GD
Sbjct: 108 KVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGD 167
Query: 436 KVGASEATLLNMLNISPFSYGLVV 507
KVG+SEA LL L I PFSYGLVV
Sbjct: 168 KVGSSEAALLAKLGIRPFSYGLVV 191
Score = 99 bits (238), Expect = 2e-21
Identities = 46/88 (52%), Positives = 66/88 (75%), Gaps = 2/88 (2%)
Frame = +2
Query: 2 LDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKL 175
+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N A+ L
Sbjct: 21 IDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNL 80
Query: 176 LPHIKGNVGFVFTRGDLVEVRDKLLETK 259
LP ++GNVG +FT+GDL EV +++ + K
Sbjct: 81 LPLLQGNVGLIFTKGDLKEVSEEVAKYK 108
Score = 63.3 bits (147), Expect = 2e-10
Identities = 24/48 (50%), Positives = 39/48 (81%)
Frame = +3
Query: 513 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPH 656
VYD+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT+A+APH
Sbjct: 194 VYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPH 241
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 115 bits (276), Expect = 4e-26
Identities = 55/84 (65%), Positives = 65/84 (77%)
Frame = +1
Query: 256 KVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 435
KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GD
Sbjct: 109 KVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168
Query: 436 KVGASEATLLNMLNISPFSYGLVV 507
KVG+SEA LL L I PFSYGLVV
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVV 192
Score = 97.5 bits (232), Expect = 8e-21
Identities = 46/88 (52%), Positives = 64/88 (72%), Gaps = 2/88 (2%)
Frame = +2
Query: 2 LDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLD--NNPALEKL 175
L+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H D N A L
Sbjct: 22 LNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSL 81
Query: 176 LPHIKGNVGFVFTRGDLVEVRDKLLETK 259
LP ++GNVG +FT+GDL EV +++ + K
Sbjct: 82 LPLLQGNVGLIFTKGDLKEVSEEVAKYK 109
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/48 (58%), Positives = 39/48 (81%)
Frame = +3
Query: 513 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPH 656
VYD+G++F PE+L++ +DL KF AGV+ + ALSLAI YPT+A+APH
Sbjct: 195 VYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPH 242
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +1
Query: 337 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 501
E + L +P +++KGT+E++ D + + G ++ A +L +L + ++ L
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 152 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 250
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 101 ARYWSHVARYGSAASVASPRYRH 33
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At2g20340.1 68415.m02375 tyrosine decarboxylase, putative similar
to tyrosine/dopa decarboxylase [Papaver somniferum]
GI:3282527, SP|Q06087 Tyrosine decarboxylase 3 (EC
4.1.1.25) {Petroselinum crispum}; contains Pfam profile
PF00282: Pyridoxal-dependent decarboxylase conserved
domain
Length = 490
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 540 PEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIGQWFQEPFG 689
PE LD +D+RAK GV + + S YP+ +S +G+ G
Sbjct: 61 PETLDQVLDDVRAKILPGVTHWQSPSFFAYYPSNSSVAGFLGEMLSAGLG 110
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 51 RNRCSRSVSRYVAPVSCSW--EKTQ*CAKPSKTTWTTIQPSRNCC 179
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,412,285
Number of Sequences: 28952
Number of extensions: 386314
Number of successful extensions: 1137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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