Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0342.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 70 3e-13
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 60 4e-10
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 57 2e-09
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 2.6
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 2.6
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 3.4
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 27 3.4
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 27 3.4
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple... 25 7.9
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 70.1 bits (164), Expect = 3e-13
Identities = 32/83 (38%), Positives = 51/83 (61%)
Frame = +2
Query: 2 RFDHFLQNSFNNDKIFKHMITSDFEYFLNLNNKSPEFLSLFIDGKLKKGEKGMSEQEIEA 181
R + + + + D+ + ++ F F++ ++PE++SLFID LKK + E IEA
Sbjct: 388 RLNTIISTTMDADRSILNSLSDAFVTFVDGYTRAPEYISLFIDDNLKKDARKAIEGSIEA 447
Query: 182 VLDKTMVLFRFLQEKDVFERYYK 250
L ++ LFRF+ EKDVFE+YYK
Sbjct: 448 TLQNSVTLFRFISEKDVFEKYYK 470
Score = 67.7 bits (158), Expect = 1e-12
Identities = 32/72 (44%), Positives = 45/72 (62%)
Frame = +1
Query: 277 NKSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVD 456
N+S+S D+E MIS+LK E G FT KLEGMF DM +S ++ E+K + +D
Sbjct: 480 NRSISSDAELGMISRLKQEAGNVFTQKLEGMFNDMNLSQELLQEYKHNSALQSAK-PALD 538
Query: 457 LSVRVLTTGFWP 492
L+V +L + FWP
Sbjct: 539 LNVSILASTFWP 550
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 510 KCNIPAAPRXAFEVFRSFYLANTPGRQLSLQPQLGSADL 626
KCN P + F FYL+ GR+L P +GSAD+
Sbjct: 559 KCNFPKVLLAQIDQFTDFYLSKHTGRKLLWYPSMGSADV 597
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 59.7 bits (138), Expect = 4e-10
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +1
Query: 283 SVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVDLS 462
S S D+E +M+SKLK CG ++TSKL+ MF+D+++S I + F + S N +D S
Sbjct: 474 SNSQDAESSMLSKLKEVCGFEYTSKLQRMFQDISLSQEITEAFWQLPQSRAGN---IDFS 530
Query: 463 VRVLTTGFWP 492
VL T FWP
Sbjct: 531 ALVLGTSFWP 540
Score = 52.0 bits (119), Expect = 8e-08
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Frame = +2
Query: 17 LQNSFNNDKIFKHMITSDFEYFLNLN-------NKSPEFLSLFIDGKLKKGEKGMSEQEI 175
+ +F+ D F + + F +N N ++SPE L+ + D L+K K + ++
Sbjct: 378 VNTAFHGDTDFTKSLDTAFRELVNRNVVCQRSSSRSPELLAKYADSILRKSNKNVDIDDV 437
Query: 176 EAVLDKTMVLFRFLQEKDVFERYYKQL 256
E L +++FR++++KDVF+ +Y +L
Sbjct: 438 EDCLSSIIIIFRYVEDKDVFQNFYTKL 464
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = +1
Query: 277 NKSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVD 456
NKS S +E ++ LK CG QFT LEGMF+D+ +S F+ + L+ D
Sbjct: 438 NKSASAQNELMLLDMLKKTCGSQFTHSLEGMFRDVNISKEFTSSFRHSKAAHNLHR---D 494
Query: 457 LSVRVLTTGFWPT 495
L V VL+ +WP+
Sbjct: 495 LYVNVLSQAYWPS 507
Score = 46.8 bits (106), Expect = 3e-06
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Frame = +2
Query: 5 FDHFLQ----NSFNNDKIFKHMITSDFEYFLN----LNNKSP-EFLSLFIDGKLKKGEKG 157
F FLQ SF +D+ + + FE F+N ++P ++ +ID L+ GE+
Sbjct: 338 FHKFLQVVVDESFLHDETLSYAMRKAFETFINGAKGSQREAPARLIAKYIDYLLRVGEQA 397
Query: 158 MSEQEIEAVLDKTMVLFRFLQEKDVFERYYK 250
+ ++ V + + LFR++ KD+FE YYK
Sbjct: 398 SGGKPLKEVFSEILDLFRYIASKDIFEAYYK 428
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 454 DLSVRVLTTGFWPTQSATRSATYRPRP 534
D+SV VLTT PT S +++ R RP
Sbjct: 811 DMSVPVLTTSRMPTISLSKAKELRTRP 837
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 301 EKNMISKLKTECGCQFTSKLEGMFKDM 381
E +MISK+ C QF K + FKD+
Sbjct: 1521 ENSMISKVGLSCFSQFVLKNKNQFKDV 1547
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 257 RAVYNNVRKRPSLVKIGIVPLFYPAQLRFPVRSSPFRL 144
R + N + RP G +F P QLRF +R++ L
Sbjct: 338 RYILENGQSRPDRTGTGTRSVFAPPQLRFSLRNNTLPL 375
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 453 GSVRPSAHDRLLADAERDAKCNIPAAPRXAFEVFRSFYLANTPGRQLSLQPQLGSADLHA 632
GS R S ++L R N+P R EVF+ + +A +P ++L+ G+ D++
Sbjct: 247 GSTRASNERQMLFINRR--LVNLPKIARVIQEVFKPYSMAQSPFFAINLRITNGTIDINV 304
Query: 633 T 635
+
Sbjct: 305 S 305
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 552 RLRTRSWARPVCCTSRRALRRPEAGREHSDGQIHSVQVQ 436
R R+RS RP SRR RRP EH+ + + ++Q
Sbjct: 199 RRRSRS-RRPGRSRSRRRSRRPSPSAEHNSAEENDPELQ 236
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 6.0
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = -1
Query: 455 STPYKFSPLESTC---SLNSSMMVLETVISLNIPSNFDVN*QPHSVLSLEIMFFSLSSET 285
ST SPL++T L+S+++ LET SL+ ++ P + LS E+
Sbjct: 240 STASLLSPLDTTSFSTKLDSTILALETDESLSRTISYATTSLPSTPGK------RLSKES 293
Query: 284 DLLSKSRFARAVYNNVRKRPSLVK 213
+S++ Y ++KR +L+K
Sbjct: 294 LAMSEASSINPEYKRIKKRANLIK 317
>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 447
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 415 EHVLSSGLNLYGVDLSVRVLTTGFWPTQSATRSAT-YRPRPGXRSKSSE 558
+ ++ L YG+ ++ + F+PT+ AT T YR G +S++ +
Sbjct: 240 QQIMLEDLREYGLVYQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDD 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,890
Number of Sequences: 5004
Number of extensions: 45354
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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