Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0342.Seq
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19637| Best HMM Match : Cullin (HMM E-Value=0) 73 3e-13
SB_6903| Best HMM Match : Cullin (HMM E-Value=0) 72 5e-13
SB_16545| Best HMM Match : Cullin (HMM E-Value=0) 56 2e-08
SB_31411| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40) 29 2.7
SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7) 29 3.6
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 28 6.3
SB_42090| Best HMM Match : Ldl_recept_a (HMM E-Value=0.54) 28 6.3
SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_19637| Best HMM Match : Cullin (HMM E-Value=0)
Length = 685
Score = 72.5 bits (170), Expect = 3e-13
Identities = 45/78 (57%), Positives = 48/78 (61%), Gaps = 25/78 (32%)
Frame = +2
Query: 68 DFEYFLNLNNKSPEFLSLFIDGKLKKGEKGM-------------------------SEQE 172
+FEYFLNLN KSPEFLSLFID KLKKG KG+ SEQE
Sbjct: 457 EFEYFLNLNGKSPEFLSLFIDDKLKKGVKGVRTCLSFVSLMVATIAIDNLFYHFQYSEQE 516
Query: 173 IEAVLDKTMVLFRFLQEK 226
+E VLDK MVLFRFLQEK
Sbjct: 517 VEVVLDKCMVLFRFLQEK 534
Score = 64.9 bits (151), Expect = 6e-11
Identities = 27/36 (75%), Positives = 33/36 (91%)
Frame = +1
Query: 325 KTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSS 432
KTECGCQFTSKLEGMFKDMTVS+T +EF++H+ +S
Sbjct: 534 KTECGCQFTSKLEGMFKDMTVSHTTNEEFRQHLSNS 569
>SB_6903| Best HMM Match : Cullin (HMM E-Value=0)
Length = 430
Score = 71.7 bits (168), Expect = 5e-13
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 RFDHFLQNSFNNDKIFKHMITSDFEYFLNLN-NKSPEFLSLFIDGKLKKGEKGMSEQEIE 178
+ D + +F + F + + FE F+N NK E ++ F+D KL+ G K +E+E+E
Sbjct: 39 QLDTMIAEAFMKSEKFVNAMKESFESFINKRPNKPAELIAKFVDSKLRAGNKEATEEELE 98
Query: 179 AVLDKTMVLFRFLQEKDVFERYYKQ 253
+LD+ MV+FRF+ KDV+E +YK+
Sbjct: 99 RLLDRIMVIFRFIHGKDVYEAFYKK 123
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/48 (62%), Positives = 38/48 (79%)
Frame = +1
Query: 280 KSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHV 423
KS S D+EK+M+SKLK ECG FTSKLEGMFKDM +S +M +F++ V
Sbjct: 133 KSASVDAEKSMLSKLKQECGAAFTSKLEGMFKDMELSKDVMVQFRQMV 180
>SB_16545| Best HMM Match : Cullin (HMM E-Value=0)
Length = 471
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/74 (36%), Positives = 48/74 (64%)
Frame = +1
Query: 277 NKSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVD 456
N S+S D+E+ MIS+LK CG ++T++L MF DM++S+ + F + + ++ +N+ G++
Sbjct: 276 NLSISMDAEEAMISRLKHACGYEYTNRLHRMFTDMSISSDLNSSFSDFLATAQVNM-GIN 334
Query: 457 LSVRVLTTGFWPTQ 498
S+ VL P Q
Sbjct: 335 FSLLVLQELIRPVQ 348
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/61 (29%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +2
Query: 113 LSLFIDGKLKKGEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYY-KQL*RNGSYSISLS 289
L+ + D LKK K +S+ E++ L + +++F+++ +KD+F+++Y K L + +++S+S
Sbjct: 221 LAKYCDLILKKSNKNLSDSELDEKLGEVIIVFKYIDDKDIFQKFYSKMLAKRLIHNLSIS 280
Query: 290 L 292
+
Sbjct: 281 M 281
>SB_31411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = +1
Query: 277 NKSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVD 456
+K ++ D ++ + + + +KL MF+D+ VS + EFK G
Sbjct: 205 SKKLTSDEIESKLKDVDVGMPADYINKLARMFQDIKVSEDLNQEFKRTCRDKG--DIADS 262
Query: 457 LSVRVLTTGFWPTQS 501
+++++L G W S
Sbjct: 263 INIKILNAGAWSRAS 277
>SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 497 CVGQKPVVSTRTDRSTPYKFSPLESTCSLNSS--MMVLETVISLNIPSN 357
C + P V RS K LES CSLNS+ + + ET + IP +
Sbjct: 131 CAAEIPPVMVCYTRSLAKKIDELESVCSLNSADFVCITETWLHKQIPDS 179
>SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)
Length = 956
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 41 KIFKHM-ITSDFEYFLNLNNKSPEFLSLFIDGKLKKGEKGMSEQEIEAVLDKTMVLFRFL 217
K+FK + +F F K LS I+G+ K +GM + I AV + +L R +
Sbjct: 200 KLFKRKEVYQNFHVFKKYQEKFITALSTLIEGEYKAIWRGMMQNLITAVEELPTLLLRSM 259
Query: 218 QEKDVFERYY 247
Q + Y
Sbjct: 260 QSASSTTKLY 269
>SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7)
Length = 474
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 475 TTGFWPTQSATRSATYRPRPGXRSKSSEASTWRTLRGGSCPCSRSWAARTCT 630
+ WPT S R++TY P R R+L +C R AA T T
Sbjct: 265 SAAIWPTMSTARTSTYGNYPAPRCAGQRMHPDRSLSLYAC-SGRDLAADTAT 315
>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = -1
Query: 572 RQVEASEDFERXPGRGRYVALRVALCVGQKPVVSTRTDRSTPYKFSPLESTCSLNSSMMV 393
+Q+E+ + E G R L + G + V ST + +F + C++NSS+M
Sbjct: 96 QQIESRDTNEEDDGAVRAALLNLVDLAGSERVSSTGAEG---VRF---KEGCNINSSLMA 149
Query: 392 LETVIS 375
L TVIS
Sbjct: 150 LGTVIS 155
>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1837
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 488 QKPVVSTRTDRSTPYKFSPLESTCSLN--SSMMVLETVISLNIPSN 357
Q P V RS K LES CSLN S+ V ET + IP +
Sbjct: 1087 QIPSVMVCNTRSLAQKIDELESYCSLNPADSVCVTETWLHEQIPDS 1132
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = -3
Query: 474 EHSDGQIH-SVQVQ-----PTREHVFLKFIHDGVRDGHI 376
EH DGQIH ++ V T H+F H + DGH+
Sbjct: 1786 EHDDGQIHRTISVASKGDIETFSHLFYHASHKNITDGHL 1824
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 502 ATRSATYRPRPGXRSKSSEASTWRTLRGGSC 594
AT + YRPR G + + + + W T + G C
Sbjct: 1030 ATAALYYRPRVGFKVQVDDENVWFTAKDGVC 1060
>SB_42090| Best HMM Match : Ldl_recept_a (HMM E-Value=0.54)
Length = 282
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 277 NKSVSDDSEKNMISKLKTECGCQFTSKLEGMF 372
N+ + D + + +S + TECGC + ++G +
Sbjct: 50 NRHLWRDRKPDCVSNITTECGCVIVTTMDGCY 81
>SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 552 RLRTRSWARPVCCTSRRALRRPEAGREHSDGQIHSVQVQPTRE 424
R R SW CC R P AG E S H+ + PTRE
Sbjct: 283 RFRITSWKIACCCLHNRIANSP-AGNEAS-RTAHASRPAPTRE 323
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,528,031
Number of Sequences: 59808
Number of extensions: 347475
Number of successful extensions: 917
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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