Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0342.Seq
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 92 3e-19
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 92 3e-19
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 64 7e-11
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 64 7e-11
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 62 5e-10
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 62 5e-10
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 62 5e-10
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 62 5e-10
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 60 2e-09
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 59 3e-09
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 59 3e-09
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 45 6e-05
AF016686-7|AAB66241.2| 664|Caenorhabditis elegans C-type lectin... 30 1.4
AB291062-1|BAF73936.1| 157|Caenorhabditis elegans dihydrofolate... 30 1.4
U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 4.2
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 28 5.6
L08403-1|AAA28025.1| 810|Caenorhabditis elegans Hypothetical pr... 28 5.6
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 28 5.6
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 28 5.6
AF024502-1|AAK77624.1| 416|Caenorhabditis elegans Hypothetical ... 28 7.4
Z81042-3|CAB02794.2| 660|Caenorhabditis elegans Hypothetical pr... 27 9.8
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 27 9.8
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 27 9.8
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/83 (49%), Positives = 59/83 (71%)
Frame = +2
Query: 5 FDHFLQNSFNNDKIFKHMITSDFEYFLNLNNKSPEFLSLFIDGKLKKGEKGMSEQEIEAV 184
F L +F +D+ FK+ DFE FLN N +SPEF++L++D L+ G K +S+ E++
Sbjct: 358 FSSLLTTAFADDRDFKNRFQHDFETFLNSNRQSPEFVALYMDDMLRSGLKCVSDAEMDNK 417
Query: 185 LDKTMVLFRFLQEKDVFERYYKQ 253
LD M+LFR+LQEKDVFE+Y+KQ
Sbjct: 418 LDNVMILFRYLQEKDVFEKYFKQ 440
Score = 78.2 bits (184), Expect = 5e-15
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +1
Query: 277 NKSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVD 456
+KS SDD EK +++KLKTECGCQFT KLE MF+D + T+ F++ + + +D
Sbjct: 449 DKSCSDDVEKALLAKLKTECGCQFTQKLENMFRDKELWLTLATSFRDWREAQPTKM-SID 507
Query: 457 LSVRVLTTGFWPT 495
+S+RVLT G WPT
Sbjct: 508 ISLRVLTAGVWPT 520
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 510 KCN---IPAAPRXAFEVFRSFYLANTPGRQLSLQPQLGSADLHAT 635
+CN +P A+E+F +Y GR+L++ LG+AD+ AT
Sbjct: 522 QCNPVVLPQELSVAYEMFTQYYTEKHTGRKLTINTLLGNADVKAT 566
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/83 (49%), Positives = 59/83 (71%)
Frame = +2
Query: 5 FDHFLQNSFNNDKIFKHMITSDFEYFLNLNNKSPEFLSLFIDGKLKKGEKGMSEQEIEAV 184
F L +F +D+ FK+ DFE FLN N +SPEF++L++D L+ G K +S+ E++
Sbjct: 358 FSSLLTTAFADDRDFKNRFQHDFETFLNSNRQSPEFVALYMDDMLRSGLKCVSDAEMDNK 417
Query: 185 LDKTMVLFRFLQEKDVFERYYKQ 253
LD M+LFR+LQEKDVFE+Y+KQ
Sbjct: 418 LDNVMILFRYLQEKDVFEKYFKQ 440
Score = 78.2 bits (184), Expect = 5e-15
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +1
Query: 277 NKSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVD 456
+KS SDD EK +++KLKTECGCQFT KLE MF+D + T+ F++ + + +D
Sbjct: 449 DKSCSDDVEKALLAKLKTECGCQFTQKLENMFRDKELWLTLATSFRDWREAQPTKM-SID 507
Query: 457 LSVRVLTTGFWPT 495
+S+RVLT G WPT
Sbjct: 508 ISLRVLTAGVWPT 520
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 510 KCN---IPAAPRXAFEVFRSFYLANTPGRQLSLQPQLGSADLHAT 635
+CN +P A+E+F +Y GR+L++ LG+AD+ AT
Sbjct: 522 QCNPVVLPQELSVAYEMFTQYYTEKHTGRKLTINTLLGNADVKAT 566
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 64.5 bits (150), Expect = 7e-11
Identities = 32/72 (44%), Positives = 44/72 (61%)
Frame = +1
Query: 280 KSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVDL 459
+S S D+EK ++ KLKTECG FT KLEGMFKDM S F +++ +N +
Sbjct: 499 RSASVDAEKMVLCKLKTECGSAFTYKLEGMFKDMDASENYGRLFNQYL--EHMNKEKANF 556
Query: 460 SVRVLTTGFWPT 495
+ RV+T +WPT
Sbjct: 557 TARVITPEYWPT 568
Score = 50.4 bits (115), Expect = 1e-06
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +2
Query: 2 RFDHFLQNSFN--NDKIFKHMITSD-FEYFLNLN-NKSPEFLSLFIDGKLKKGEKGMSEQ 169
+ D + SF ND + SD FE F+N ++S E +S L K +S+
Sbjct: 401 KVDFIMTGSFKSANDPVKMRQCLSDAFESFVNKQVDRSAELISKHFHTLLHSSNKNVSDD 460
Query: 170 E-IEAVLDKTMVLFRFLQEKDVFERYYKQ 253
++ ++D+ +VLFR+L+ KDVFE YYK+
Sbjct: 461 TTLDQMVDEAIVLFRYLRGKDVFEAYYKR 489
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 64.5 bits (150), Expect = 7e-11
Identities = 32/72 (44%), Positives = 44/72 (61%)
Frame = +1
Query: 280 KSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVDL 459
+S S D+EK ++ KLKTECG FT KLEGMFKDM S F +++ +N +
Sbjct: 536 RSASVDAEKMVLCKLKTECGSAFTYKLEGMFKDMDASENYGRLFNQYL--EHMNKEKANF 593
Query: 460 SVRVLTTGFWPT 495
+ RV+T +WPT
Sbjct: 594 TARVITPEYWPT 605
Score = 50.4 bits (115), Expect = 1e-06
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +2
Query: 2 RFDHFLQNSFN--NDKIFKHMITSD-FEYFLNLN-NKSPEFLSLFIDGKLKKGEKGMSEQ 169
+ D + SF ND + SD FE F+N ++S E +S L K +S+
Sbjct: 438 KVDFIMTGSFKSANDPVKMRQCLSDAFESFVNKQVDRSAELISKHFHTLLHSSNKNVSDD 497
Query: 170 E-IEAVLDKTMVLFRFLQEKDVFERYYKQ 253
++ ++D+ +VLFR+L+ KDVFE YYK+
Sbjct: 498 TTLDQMVDEAIVLFRYLRGKDVFEAYYKR 526
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/66 (42%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Frame = +2
Query: 98 KSPEFLSLFIDGKLKKGEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYYKQL*RN---G 268
K+ E L+ + DG LKK KG+SE ++EA LD +V+FR++++KD+F+++Y ++ N
Sbjct: 403 KASERLARYTDGLLKKSTKGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIA 462
Query: 269 SYSISL 286
S SIS+
Sbjct: 463 STSISM 468
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +1
Query: 283 SVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHV 423
S+S D+E+ MI+KLK CG +FTSKL MF D+ +S + + F +H+
Sbjct: 465 SISMDAEELMINKLKQACGYEFTSKLSRMFTDIGLSQELSNNFDKHI 511
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/66 (42%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Frame = +2
Query: 98 KSPEFLSLFIDGKLKKGEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYYKQL*RN---G 268
K+ E L+ + DG LKK KG+SE ++EA LD +V+FR++++KD+F+++Y ++ N
Sbjct: 420 KASERLARYTDGLLKKSTKGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIA 479
Query: 269 SYSISL 286
S SIS+
Sbjct: 480 STSISM 485
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +1
Query: 283 SVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGL---NLYGV 453
S+S D+E+ MI+KLK CG +FTSKL MF D+ +S + + F +H+ ++ V
Sbjct: 482 SISMDAEELMINKLKQACGYEFTSKLSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFV 541
Query: 454 DLSVRVLTTGFWP 492
+L G WP
Sbjct: 542 PTQTMILQAGSWP 554
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/66 (42%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Frame = +2
Query: 98 KSPEFLSLFIDGKLKKGEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYYKQL*RN---G 268
K+ E L+ + DG LKK KG+SE ++EA LD +V+FR++++KD+F+++Y ++ N
Sbjct: 403 KASERLARYTDGLLKKSTKGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIA 462
Query: 269 SYSISL 286
S SIS+
Sbjct: 463 STSISM 468
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +1
Query: 283 SVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGL---NLYGV 453
S+S D+E+ MI+KLK CG +FTSKL MF D+ +S + + F +H+ ++ V
Sbjct: 465 SISMDAEELMINKLKQACGYEFTSKLSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFV 524
Query: 454 DLSVRVLTTGFWP 492
+L G WP
Sbjct: 525 PTQTMILQAGSWP 537
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/66 (42%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Frame = +2
Query: 98 KSPEFLSLFIDGKLKKGEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYYKQL*RN---G 268
K+ E L+ + DG LKK KG+SE ++EA LD +V+FR++++KD+F+++Y ++ N
Sbjct: 479 KASERLARYTDGLLKKSTKGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIA 538
Query: 269 SYSISL 286
S SIS+
Sbjct: 539 STSISM 544
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +1
Query: 283 SVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGL---NLYGV 453
S+S D+E+ MI+KLK CG +FTSKL MF D+ +S + + F +H+ ++ V
Sbjct: 541 SISMDAEELMINKLKQACGYEFTSKLSRMFTDIGLSQELSNNFDKHIADIKTVQPDVKFV 600
Query: 454 DLSVRVLTTGFWP 492
+L G WP
Sbjct: 601 PTQTMILQAGSWP 613
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/63 (42%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Frame = +2
Query: 107 EFLSLFIDGKLKKGEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYYKQL*RN---GSYS 277
E L+ + DG LKK KG+SE ++EA LD +V+FR++++KD+F+++Y ++ N S S
Sbjct: 406 ERLARYTDGLLKKSTKGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIASTS 465
Query: 278 ISL 286
IS+
Sbjct: 466 ISM 468
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +1
Query: 283 SVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHV 423
S+S D+E+ MI+KLK CG +FTSKL MF D+ +S + + F +H+
Sbjct: 465 SISMDAEELMINKLKQACGYEFTSKLSRMFTDIGLSQELSNNFDKHI 511
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +1
Query: 283 SVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVDLS 462
S SD++E N I+KLK+ CG ++T++L M D VS + +FKE + L V+ +
Sbjct: 483 SASDEAEANFITKLKSMCGYEYTARLSKMVNDTQVSKDLTADFKEK-KADMLGQKSVEFN 541
Query: 463 VRVLTTGFWPTQSAT 507
V VL++G WPT T
Sbjct: 542 VLVLSSGSWPTFPTT 556
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Frame = +2
Query: 2 RFDHFLQNSFNNDKIFKHMITSDFEYFLNLN------------NKSPEFLSLFIDGKLKK 145
R+ + SF N+ F + F+N N KS E L+ + D L+K
Sbjct: 377 RYQSLVNRSFKNEPGFMQSLDKAATSFINNNAVTKRAPPQAQLTKSAELLARYCDQLLRK 436
Query: 146 GEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYYKQL 256
K E E+E + K MV+F+++ +KDVF ++Y ++
Sbjct: 437 SSKMPDEAELEELQTKIMVVFKYIDDKDVFSKFYTKM 473
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +1
Query: 283 SVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVDLS 462
S SD++E N I+KLK+ CG ++T++L M D VS + +FKE + L V+ +
Sbjct: 483 SASDEAEANFITKLKSMCGYEYTARLSKMVNDTQVSKDLTADFKEK-KADMLGQKSVEFN 541
Query: 463 VRVLTTGFWPTQSAT 507
V VL++G WPT T
Sbjct: 542 VLVLSSGSWPTFPTT 556
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Frame = +2
Query: 2 RFDHFLQNSFNNDKIFKHMITSDFEYFLNLN------------NKSPEFLSLFIDGKLKK 145
R+ + SF N+ F + F+N N KS E L+ + D L+K
Sbjct: 377 RYQSLVNRSFKNEPGFMQSLDKAATSFINNNAVTKRAPPQAQLTKSAELLARYCDQLLRK 436
Query: 146 GEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYYKQL 256
K E E+E + K MV+F+++ +KDVF ++Y ++
Sbjct: 437 SSKMPDEAELEELQTKIMVVFKYIDDKDVFSKFYTKM 473
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical
protein K08E7.7 protein.
Length = 729
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +1
Query: 277 NKSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVD 456
N S SDD+E+ I+ L G ++T L M +D +S + EFK+ +D
Sbjct: 433 NSSASDDAEEKFITNLTATEGLEYTRNLVKMVEDAKISKDLTTEFKDIKTEK-----SID 487
Query: 457 LSVRVLTTGFWPT 495
+V + TTG WP+
Sbjct: 488 FNVILQTTGAWPS 500
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +2
Query: 92 NNKSPEFLSLFIDGKLKKGEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYYK 250
+ +S ++L+ + D LKK K E LDK + + +++ EKDVF+ YY+
Sbjct: 375 STRSADYLARYCDQLLKKNSKVQDE----TALDKALTVLKYISEKDVFQLYYQ 423
>AF016686-7|AAB66241.2| 664|Caenorhabditis elegans C-type lectin
protein 44 protein.
Length = 664
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 352 SKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVD 456
S+ E F +SNT++DEF+ + G+ Y VD
Sbjct: 297 SQAENDFIQSLISNTVIDEFRTGAATDGVGKYWVD 331
>AB291062-1|BAF73936.1| 157|Caenorhabditis elegans dihydrofolate
reductase protein.
Length = 157
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = -1
Query: 323 SLEIMFFSLSSETDLLSKSRFARAVYNNVRKRPSLVKIGIVPLFYPAQLRFPVRSSPFRL 144
S+E LS TD + S + +YN++ ++ ++ + V + ++FP+ F
Sbjct: 79 SIENALKELSKVTDHVYVSGGGQ-IYNSLIEKADIIHLSTVHVEVEGDIKFPIMPENF-- 135
Query: 143 SLIFHQ*TMTRIPVTY 96
+L+F Q M+ I TY
Sbjct: 136 NLVFEQFFMSNINYTY 151
>U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical
protein C27A2.4 protein.
Length = 678
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 283 SVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLN 441
+V DD K+ ++ + C CQ SKL+ M K++ I++ K + L S L+
Sbjct: 130 TVPDDYSKDCVNNVM--CKCQRRSKLQNMAKNLEEYKNIVEHPKVNSLFSKLS 180
>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
protein ZK970.5 protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 522 VCCTSRRALRRPEAGREHSDGQIHSVQVQ 436
+C +S+ RR E R HS+ QIH+++++
Sbjct: 514 ICMSSKIRNRRVEQSRLHSEWQIHAIKLR 542
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
gene nameprotein 152, isoform a protein.
Length = 2560
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 541 RSKSSEASTWRTLRGGSCPCSRSWAARTC 627
R SS+ ST+ L GG PCS AA C
Sbjct: 1315 RKLSSDRSTFSILTGGKSPCSCDVAACGC 1343
>L08403-1|AAA28025.1| 810|Caenorhabditis elegans Hypothetical
protein F42H10.5 protein.
Length = 810
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 319 WRSCSFHCHQRQTY*VRAVSLELFIITFENVL 224
W+SCS C + +S+ +F +T E VL
Sbjct: 737 WKSCSSRCSELSDLATELLSIPIFTLTAERVL 768
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 541 RSKSSEASTWRTLRGGSCPCSRSWAARTC 627
R SS+ ST+ L GG PCS AA C
Sbjct: 1257 RKLSSDRSTFSILTGGKSPCSCDVAACGC 1285
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 541 RSKSSEASTWRTLRGGSCPCSRSWAARTC 627
R SS+ ST+ L GG PCS AA C
Sbjct: 1439 RKLSSDRSTFSILTGGKSPCSCDVAACGC 1467
>AF024502-1|AAK77624.1| 416|Caenorhabditis elegans Hypothetical
protein M151.7 protein.
Length = 416
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = -1
Query: 377 SLNIPSNFDVN*QPHSVLSLEIMFFSLSSETDLLSKSRFARAVYNNVRKRPS----LVKI 210
S N ++ + +PH L+ E+ S S+ +L + FAR N+ P L
Sbjct: 296 SFNSDTSTSITPEPHGHLAPELQLPSASALNGMLHGTGFARDGQNSPNHTPKDFGHLQCT 355
Query: 209 GIVPLFYPAQLRFPVRSSPFR 147
+ F+P ++ R SP R
Sbjct: 356 SDLRKFFPEKVELEARESPKR 376
>Z81042-3|CAB02794.2| 660|Caenorhabditis elegans Hypothetical
protein C27H6.3 protein.
Length = 660
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +1
Query: 301 EKNMISKL--KTECGCQFTSKLEGMFKDM--TVSNTIMDEFKEHVLSSGLNLYGVDLS 462
E++++ L K G Q S++EG+F+D+ +V I+D + + SG+++ V S
Sbjct: 84 EESLLDALLGKALAGDQMNSRIEGLFEDLDSSVEPDIIDRSELEDVDSGISVGAVSSS 141
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 352 SKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYG 450
S L+ ++ V T+MD K+H++S L G
Sbjct: 763 STLKDAVREKLVKRTVMDSMKQHIISGSEKLDG 795
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 352 SKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYG 450
S L+ ++ V T+MD K+H++S L G
Sbjct: 763 STLKDAVREKLVKRTVMDSMKQHIISGSEKLDG 795
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,618,252
Number of Sequences: 27780
Number of extensions: 257767
Number of successful extensions: 928
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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