Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0342.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 219 CKNRNSTIVLSSTASISCSLI 157
           CKNRN  + +SS AS + S +
Sbjct: 2   CKNRNYALDVSSAASKTSSKV 22


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 107 EFLSLFIDGKLKKGEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYYK 250
           EFLS++  G L +GE  +       +L +   LF+       F+ ++K
Sbjct: 81  EFLSIYKHGMLPRGE--LFSLYYPQLLREMSALFKLFYHAKDFDIFFK 126


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 107 EFLSLFIDGKLKKGEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYYK 250
           EFLS++  G L +GE  +       +L +   LF+       F+ ++K
Sbjct: 81  EFLSIYKHGMLPRGE--LFSLYYPQLLREMSALFKLFYHAKDFDIFFK 126


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 47  FKHMITSDFEYFLNLNNKS 103
           F H+  +DF Y + +NN++
Sbjct: 475 FTHLNHADFSYTIVINNRN 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,412
Number of Sequences: 438
Number of extensions: 3039
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)