Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0342.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g69670.1 68414.m08018 cullin, putative contains similarity to... 122 2e-28
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo... 119 2e-27
At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C... 90 1e-18
At4g02570.1 68417.m00351 cullin family protein similar to cullin... 79 4e-15
At1g02980.1 68414.m00268 cullin family protein similar to cullin... 66 3e-11
At2g13690.1 68415.m01510 PRLI-interacting factor, putative simil... 28 5.2
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 28 5.2
>At1g69670.1 68414.m08018 cullin, putative contains similarity to
Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
[Homo sapiens]; contains Pfam profile PF00888: Cullin
family
Length = 732
Score = 122 bits (294), Expect = 2e-28
Identities = 49/84 (58%), Positives = 70/84 (83%)
Frame = +2
Query: 2 RFDHFLQNSFNNDKIFKHMITSDFEYFLNLNNKSPEFLSLFIDGKLKKGEKGMSEQEIEA 181
++D + +FNNDK F++ + S FEYF+NLN +SPEF+SLF+D KL+KG KG+ E++++
Sbjct: 342 KYDRIINMAFNNDKTFQNALNSSFEYFVNLNTRSPEFISLFVDDKLRKGLKGVGEEDVDL 401
Query: 182 VLDKTMVLFRFLQEKDVFERYYKQ 253
+LDK M+LFR+LQEKDVFE+YYKQ
Sbjct: 402 ILDKVMMLFRYLQEKDVFEKYYKQ 425
Score = 80.2 bits (189), Expect = 1e-15
Identities = 43/74 (58%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Frame = +1
Query: 280 KSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVS-NTIMDEFKEHVLSSGLNLYGVD 456
K+VSDD+E+N+I KLKTECG QFTSKLEGMF DM S +T++ + H S G
Sbjct: 435 KTVSDDAERNLIVKLKTECGYQFTSKLEGMFTDMKTSHDTLLGFYNSHPELS----EGPT 490
Query: 457 LSVRVLTTGFWPTQ 498
L V+VLTTG WPTQ
Sbjct: 491 LVVQVLTTGSWPTQ 504
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +3
Query: 510 KCNIPAAPRXAFEVFRSFYLANTPGRQLSLQPQLGSADLHATXG 641
+CN+PA E FRS+YL GR+LS Q +G+AD+ A G
Sbjct: 508 QCNLPAEVSVLCEKFRSYYLGTHTGRRLSWQTNMGTADIKAVFG 551
>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
contains Pfam profile PF00888: Cullin family
Length = 732
Score = 119 bits (286), Expect = 2e-27
Identities = 48/84 (57%), Positives = 69/84 (82%)
Frame = +2
Query: 2 RFDHFLQNSFNNDKIFKHMITSDFEYFLNLNNKSPEFLSLFIDGKLKKGEKGMSEQEIEA 181
++D + +F NDK F++ + S FEYF+NLN +SPEF+SLF+D KL+KG KG+++ ++E
Sbjct: 342 KYDKIINTAFGNDKTFQNALNSSFEYFINLNARSPEFISLFVDDKLRKGLKGITDVDVEV 401
Query: 182 VLDKTMVLFRFLQEKDVFERYYKQ 253
+LDK M+LFR+LQEKDVFE+YYKQ
Sbjct: 402 ILDKVMMLFRYLQEKDVFEKYYKQ 425
Score = 77.0 bits (181), Expect = 1e-14
Identities = 43/76 (56%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Frame = +1
Query: 280 KSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDM-TVSNTIMDEFKEHVLSSGLNLYGVD 456
K+VSDD+E+++I KLKTECG QFTSKLEGMF DM T +T+ + H S G
Sbjct: 435 KTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSEDTMRGFYGSHPELS----EGPT 490
Query: 457 LSVRVLTTGFWPTQSA 504
L V+VLTTG WPTQ A
Sbjct: 491 LIVQVLTTGSWPTQPA 506
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = +3
Query: 513 CNIPAAPRXAFEVFRSFYLANTPGRQLSLQPQLGSADLHATXG 641
CN+PA E FRS+YL GR+LS Q +G+AD+ A G
Sbjct: 509 CNLPAEVSVLCEKFRSYYLGTHTGRRLSWQTNMGTADIKAIFG 551
>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
profile PF00888: Cullin family
Length = 792
Score = 89.8 bits (213), Expect = 1e-18
Identities = 42/72 (58%), Positives = 54/72 (75%)
Frame = +1
Query: 280 KSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVDL 459
KS S D+EK+MISKLKTECG QFT+KLEGMFKD+ +S I + FK+ + G+++
Sbjct: 497 KSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEM 556
Query: 460 SVRVLTTGFWPT 495
SV VLTTG+WPT
Sbjct: 557 SVHVLTTGYWPT 568
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 DHFLQNSFNNDKIFKHMITSDFEYFLNLNNKSP-EFLSLFIDGKLKKGEKGMSEQEIEAV 184
D + SF ++ F + I FE+ +NL P E ++ F+D KL+ G KG SE+E+E+V
Sbjct: 405 DIIWEESFYKNESFGNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELESV 464
Query: 185 LDKTMVLFRFLQEKDVFERYYKQ 253
L+K +VLFRF+Q KDVFE +YK+
Sbjct: 465 LEKVLVLFRFIQGKDVFEAFYKK 487
>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
[Homo sapiens] GI:3639052; contains Pfam profile
PF00888: Cullin family
Length = 738
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/73 (45%), Positives = 55/73 (75%)
Frame = +1
Query: 277 NKSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVD 456
++S +DD E+++++KLK +CG QFTSK+EGM D+T++ + F++++ S+ G+D
Sbjct: 444 DRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNPAANPGID 503
Query: 457 LSVRVLTTGFWPT 495
L+V VLTTGFWP+
Sbjct: 504 LTVTVLTTGFWPS 516
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Frame = +2
Query: 14 FLQNSFNNDKIFKHMITSDFEYFLN---LNNKSPEFLSLFIDGKLKKG-EKGMSEQEIEA 181
++ F N +F + FE F N + S E L+ F D LKKG + +S++ IE
Sbjct: 352 YVTECFQNHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIED 411
Query: 182 VLDKTMVLFRFLQEKDVFERYYKQ 253
L+K + L ++ +KD+F +Y++
Sbjct: 412 TLEKVVKLLAYISDKDLFAEFYRK 435
>At1g02980.1 68414.m00268 cullin family protein similar to cullin 1
[Homo sapiens] GI:3139077; contains Pfam profile
PF00888: Cullin family
Length = 742
Score = 65.7 bits (153), Expect = 3e-11
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +1
Query: 277 NKSVSDDSEKNMISKLKTECGCQFTSKLEGMFKDMTVSNTIMDEFKEHVLSSGLNLYGVD 456
+++ +D E+++++K K G QFTSK+EGM DMT++ F E + + G+D
Sbjct: 448 DRNGNDYHERSLLTKFKELLGAQFTSKMEGMLTDMTLAKEHQTNFVEFLSVNKTKKLGMD 507
Query: 457 LSVRVLTTGFWPTQSAT 507
+V VLTTGFWP+ T
Sbjct: 508 FTVTVLTTGFWPSYKTT 524
>At2g13690.1 68415.m01510 PRLI-interacting factor, putative similar
to PRLI-interacting factor G [Arabidopsis thaliana]
GI:11139264 (PMID:9765207); supporting cDNA
gi|26450291|dbj|AK117606.1|
Length = 544
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 110 FLSLFID-GKLKKGEKGMSEQEIEAVLDKTMVLFRFLQEKDVFERYYKQL*RNGSYSISL 286
F + +D G L++ +KG+ +E+E + +T++ ++ VF +++ ++G+ +L
Sbjct: 463 FKPMLVDFGWLQRCKKGLDMREVEEGMGQTLLTLPVKEQYQVFMEWFRWFSKHGTECPNL 522
Query: 287 S 289
S
Sbjct: 523 S 523
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 491 GQKPVVSTRTDRSTPYKFSPL 429
G+ PV+STR RSTP + P+
Sbjct: 591 GETPVISTRRARSTPARVMPI 611
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,782,545
Number of Sequences: 28952
Number of extensions: 240129
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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