Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0340.Seq
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical...    31   1.2  
Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical p...    30   2.0  
AY728064-1|AAU43725.1|  277|Caenorhabditis elegans cadmium-induc...    30   2.0  
Z75531-9|CAA99802.1|  277|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AY728060-1|AAU43721.1|  277|Caenorhabditis elegans cadmium-induc...    29   2.7  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    29   3.5  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    29   3.5  

>AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical
           protein Y54G2A.40 protein.
          Length = 636

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 247 LQQLSC*CSCPYSLRYHSLC-QCYNIHHQCLVGAHLGRRTEFSFAFQQI 104
           L++  C CSC      HSLC QC+N +  C + A    RTE ++A +QI
Sbjct: 24  LEKRQCYCSC-----QHSLCTQCFNKYKNCPICAKPLVRTE-NYAARQI 66


>Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical
           protein K01D12.11 protein.
          Length = 277

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = -1

Query: 325 SPITLS*KAENSKFQGIKPVLYILEILQQLSC*CSCPYSLRYHSLCQCYNIHHQCLVGAH 146
           +P T+  K    K    K  +Y+ +  +  SC    P+ ++   LC+ YNI ++ +V   
Sbjct: 26  TPPTIKPKPAIHKTDYKKDTVYLYQFKRIKSCPNLSPFCMKLEILCRAYNIPYE-VVETS 84

Query: 145 LGRRTEFSFAFQQIRHPH 92
           + R    +  F ++   H
Sbjct: 85  MSRSRNGTLPFIELNGEH 102


>AY728064-1|AAU43725.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-4 protein.
          Length = 277

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = -1

Query: 325 SPITLS*KAENSKFQGIKPVLYILEILQQLSC*CSCPYSLRYHSLCQCYNIHHQCLVGAH 146
           +P T+  K    K    K  +Y+ +  +  SC    P+ ++   LC+ YNI ++ +V   
Sbjct: 26  TPPTIKPKPAIHKTDYKKDTVYLYQFKRIKSCPNLSPFCMKLEILCRAYNIPYE-VVETS 84

Query: 145 LGRRTEFSFAFQQIRHPH 92
           + R    +  F ++   H
Sbjct: 85  MSRSRNGTLPFIELNGEH 102


>Z75531-9|CAA99802.1|  277|Caenorhabditis elegans Hypothetical
           protein K01D12.12 protein.
          Length = 277

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/78 (21%), Positives = 36/78 (46%)
 Frame = -1

Query: 325 SPITLS*KAENSKFQGIKPVLYILEILQQLSC*CSCPYSLRYHSLCQCYNIHHQCLVGAH 146
           +P T+  K    K    K  +Y+ +  +  +C    P+ ++   LC+ YNI ++ +V + 
Sbjct: 26  TPPTIKPKPAIHKTDYKKDTVYLYQFKRLKNCPNLSPFCMKIEILCRVYNIPYE-IVESS 84

Query: 145 LGRRTEFSFAFQQIRHPH 92
           + R    +  F ++   H
Sbjct: 85  MARSRNGTLPFIELNGEH 102


>AY728060-1|AAU43721.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-6 protein.
          Length = 277

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/78 (21%), Positives = 36/78 (46%)
 Frame = -1

Query: 325 SPITLS*KAENSKFQGIKPVLYILEILQQLSC*CSCPYSLRYHSLCQCYNIHHQCLVGAH 146
           +P T+  K    K    K  +Y+ +  +  +C    P+ ++   LC+ YNI ++ +V + 
Sbjct: 26  TPPTIKPKPAIHKTDYKKDTVYLYQFKRLKNCPNLSPFCMKIEILCRVYNIPYE-IVESS 84

Query: 145 LGRRTEFSFAFQQIRHPH 92
           + R    +  F ++   H
Sbjct: 85  MARSRNGTLPFIELNGEH 102


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
            related protein 2 protein.
          Length = 1272

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 377  LQDCLI*R-VCISINR*VLYDFYIAVIQRSDCHGFVVPAPDARILNGYEYGSAARNLRGQ 553
            L DC I   +C   NR V Y   +   + ++ H F++  PD    +  E G+     + Q
Sbjct: 1115 LFDCTIGENICYGTNRNVTYQEIVEAAKMANIHNFILGLPDGYDTHVGEKGTQLSGGQKQ 1174

Query: 554  RCKMASLIL 580
            R  +A  ++
Sbjct: 1175 RIAIARALV 1183


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
            PGP-2 protein.
          Length = 1272

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 377  LQDCLI*R-VCISINR*VLYDFYIAVIQRSDCHGFVVPAPDARILNGYEYGSAARNLRGQ 553
            L DC I   +C   NR V Y   +   + ++ H F++  PD    +  E G+     + Q
Sbjct: 1115 LFDCTIGENICYGTNRNVTYQEIVEAAKMANIHNFILGLPDGYDTHVGEKGTQLSGGQKQ 1174

Query: 554  RCKMASLIL 580
            R  +A  ++
Sbjct: 1175 RIAIARALV 1183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,917,054
Number of Sequences: 27780
Number of extensions: 353753
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)