Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0340.Seq
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    31   0.62 
At5g56800.1 68418.m07088 hypothetical protein                          30   1.9  
At1g09910.1 68414.m01115 expressed protein                             30   1.9  
At2g36710.1 68415.m04504 pectinesterase family protein contains ...    29   3.3  

>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 15  CLNSGWACSRRAQQCSTKAEHHKDKKCGCRIC*KAKEN 128
           CL S W C   + + +   E    K+C C +C    EN
Sbjct: 42  CLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDEN 79


>At5g56800.1 68418.m07088 hypothetical protein
          Length = 344

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 434 DFYIAVIQRSDCHGFVVPAPDARILN 511
           D+  AV + +D HGFV+ AP  R +N
Sbjct: 134 DYSWAVSRPADVHGFVIDAPSLRFMN 159


>At1g09910.1 68414.m01115 expressed protein
          Length = 675

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 3   NHEVCLNSGWACSRRAQQCSTKAEHHKDKK 92
           NHE  LN+G  CS    Q ++   H KD +
Sbjct: 14  NHETALNAGHHCSEGTDQGTSGLSHRKDHR 43


>At2g36710.1 68415.m04504 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 407

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 599 AILTAATGLMRPSCIFAHVNFLQHFHIHNHLGYVHPEQVQ 480
           +I T    L + S  F H +   H H H+H  Y H E ++
Sbjct: 33  SIATTIGALAKYSTFFGHKHHHHHHHHHHHHHYHHHEPIK 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,947,425
Number of Sequences: 28952
Number of extensions: 322791
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)