Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0337.Seq
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    29   0.92 
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    28   1.2  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.2  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    28   1.6  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   2.1  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.7  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    26   4.9  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   6.5  

>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = +2

Query: 458 KTRPHFILYDQLRRGGHHIGSASGTLTERFGLQSIQRSRSVFIPRDDCDGNL*TSVTETA 637
           K  P F+L   LRR    + +A    T  FG      S  V++ +D        +  +  
Sbjct: 452 KNHPEFVLIRHLRREEALLPNAKPVKTATFGNGKKATSEEVYLRKDVVICKTPENYHKEG 511

Query: 638 RIRGKGDRCRSITEASTTTWSQ 703
           R+  +G++ R + +A   T S+
Sbjct: 512 RVIKEGEQPRKMVKARAVTISR 533


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
 Frame = +3

Query: 309 EPIPIYRVMDN--NGQIID-KNEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRI-S 476
           +P P+ ++ D+   G  ID  + E  + K  L+ +Y+ MV +  ++       +  +I  
Sbjct: 48  KPFPV-KLDDSVFEGYKIDVPSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRG 106

Query: 477 FYMTNYGEEGIT*AAPRALSPKDLVFSQYREVGVFLYRGMTV 602
           F   + G+E +      A++  D + + YR  G    RG+++
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGLSI 148


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
 Frame = -1

Query: 406  YMLISVALSKFGSSFLSMICPLLSITR*IGIGS*LVSLK--NFIS--LTYGALAPEILLS 239
            Y L+ ++ S   S+ LS  C  +  +  + +GS +  LK  NF+   +T+     EILLS
Sbjct: 1220 YRLLGISCSDMVSNILSNECLPIKESFIVLLGSCIKQLKTENFLEYKVTFAKWV-EILLS 1278

Query: 238  YHRHSVPFRASYASTKAISRY 176
            Y     PF +  A+  +I  +
Sbjct: 1279 YSNEYQPFSSRKAALDSIIHF 1299


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 439 LSIWLSCTMVLYMLISVALSKF-GSSFLSMI 350
           LSIW S  M+LY L+ V    F GSS +S++
Sbjct: 237 LSIWQSLVMILYYLLYVLFVFFSGSSGVSVV 267


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 273 VSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSH 431
           +SE+++      + +P Y + D      DK+  PN+D   +  +  T+V L +
Sbjct: 592 LSEIRYSLRELVQDLPSYSLFDTLWVFYDKHIYPNVDPDYISTLIDTLVSLEN 644


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 71  NNIFENQCNRKLLYWIFE-NRLSMS 142
           NN F+N CNRK+  +I E  RLS S
Sbjct: 85  NNTFQNPCNRKIEGYIKEIERLSNS 109


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 552 FSQYREVGVFLYRGMTVTETCEPVLRKLRGSGERETDAGPLRKQAP 689
           F  Y    +FLY  ++ +    P   +L GSGER+TD+  + +  P
Sbjct: 199 FPIYVFSSLFLYHPLSRSRQL-PTKMQLDGSGERKTDSSLVHQNPP 243


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +3

Query: 159  KKIDNKYREMAFVDAYEARNGTEWR--W*DSRISGARAPYVSEMKFFNETSYEPIPIYRV 332
            +K    Y  +A  D Y  +  + +   W    ISG   P  S++K  N  + +P+ +  V
Sbjct: 1381 RKHQGGYGVVAVSDKYSKQTLSRYPIFWSLVHISGLPNPDPSDLKLLNHLTDDPVDVDFV 1440

Query: 333  MDNNGQIIDK--NEEPNLD 383
            ++   +++ K   E  NLD
Sbjct: 1441 LEAKRKLLKKQTQEWANLD 1459


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 288 FFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQ 422
           +F  ++Y+ I     +DNN  ++D N  PN + ++  + Y +  Q
Sbjct: 268 YFPNSTYQNI--LNSLDNNPAVLDLNGPPNQESSSSASSYGSRTQ 310


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 41  DEHKVEFCMNNNIFENQCNRKLLYWIFENRLSMS 142
           +EH+    ++ N++ +  NRKLL + FE   S+S
Sbjct: 47  EEHETTPIISQNLYLDTINRKLLDFDFEKVCSVS 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,621
Number of Sequences: 5004
Number of extensions: 75003
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)