Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0337.Seq
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421...   107   7e-24
02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386     30   1.7  
03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612           29   5.1  
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426...    29   5.1  
07_03_1635 + 28286133-28286831                                         28   9.0  
03_02_0273 - 7036125-7037999                                           28   9.0  

>12_01_0535 +
           4208410-4208661,4209529-4209627,4210125-4210265,
           4210378-4210560,4210664-4210821,4210905-4211004,
           4211085-4211196,4211241-4211419,4211489-4211674,
           4211762-4211929
          Length = 525

 Score =  107 bits (258), Expect = 7e-24
 Identities = 52/118 (44%), Positives = 74/118 (62%)
 Frame = +3

Query: 255 GARAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHM 434
           G +  +V+EM F  E+  + I  YRV+D++G+ I  +    + K   + MY  M  L  M
Sbjct: 124 GGKVSFVAEMNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEMATLQVM 183

Query: 435 DKILYESQRQGRISFYMTNYGEEGIT*AAPRALSPKDLVFSQYREVGVFLYRGMTVTE 608
           D I +E+QRQGRISFY+T++GEE I  A+  AL+  D+V  QYRE GV L+RG T+ E
Sbjct: 184 DTIFFEAQRQGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQE 241



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +1

Query: 604 RKLVNQCYGNCEDPGKGRQMPVHYGSKHHNMVTIS 708
           ++  NQC+GN  D GKGRQMP+HYGS   N  T+S
Sbjct: 240 QEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVS 274


>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
          Length = 837

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 697 PCCGACFRNGPASVSLSPDPRSFRNTGSQVSVTVIPRYK 581
           P  G C   G  S+ LS D R FR+T  QV  T    Y+
Sbjct: 172 PTEGPCNGKGCCSIKLSRDLRGFRSTLVQVDATAAQSYQ 210


>03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612
          Length = 648

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -2

Query: 597 SSLGIKTLLLLCID*RPNLSVRVPEALPM*CPPRRSWSYKMKCGLVFVIHIEFYPYGSVV 418
           + LG K LL++     P L  +  E L +      S  +  KC L   IHI+   Y  ++
Sbjct: 410 AGLGAKLLLVIQSGCGPELKQQASELLKLCTMNCTSTVFISKCKLTKTIHIQNAAYTQLI 469

Query: 417 PW 412
            W
Sbjct: 470 QW 471


>01_06_0319 -
           28441082-28441102,28441630-28441701,28442568-28442627,
           28442918-28443105,28444300-28444327,28444880-28444907,
           28444942-28445163,28445238-28445409,28446224-28447468,
           28447573-28447741,28447820-28448045,28449096-28449451,
           28449530-28449724,28450655-28450864,28451729-28452004
          Length = 1155

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = -1

Query: 322 IGIGS*LVSLKNFISLTYGALAPEILLSYHRHSVPFRASYASTKAISRYLLSIFFSH 152
           + I S L S K+F SL+Y + AP +  S    S    AS + +  ISR + +IF  H
Sbjct: 600 LAISSSLASAKSFRSLSYNSSAPSLYSSL--FSWETDASLSCSDGISRPIDTIFKFH 654


>07_03_1635 + 28286133-28286831
          Length = 232

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 679 FRNGPASVSLSPDPRSFRNTGSQVSVTVIPRYKNTPTSLY*LKTKSFGESARG-AAYVMP 503
           +R GP  V   P P    +TG+  +  V+P Y N P  +Y     S    ARG AA   P
Sbjct: 126 YRLGPVVV---PAPPLAADTGAVPAYLVVPCYANAPPYVY----LSPANPARGEAASASP 178

Query: 502 SSP 494
           S P
Sbjct: 179 SPP 181


>03_02_0273 - 7036125-7037999
          Length = 624

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 286 FISLTYGALAPEILLSYHRHSVPFRASYASTKAISRYLLSIFFSHHYF*HR*PVFKNPIQ 107
           F  LTYGA+A +     HRH +    S A +      L +   ++  +  + PV K+   
Sbjct: 226 FPPLTYGAIAADPGAGKHRHGIIVATSIAGSFVACAVLCTAILAYRRYRKKAPVPKHVSP 285

Query: 106 KFT 98
           K +
Sbjct: 286 KLS 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,843,775
Number of Sequences: 37544
Number of extensions: 478445
Number of successful extensions: 1114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)