Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0337.Seq
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57290| Best HMM Match : E1_dh (HMM E-Value=1.4e-05)                103   1e-22
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8)                      29   4.0  
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_7425| Best HMM Match : MAM (HMM E-Value=0.45)                       29   5.2  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     28   9.1  

>SB_57290| Best HMM Match : E1_dh (HMM E-Value=1.4e-05)
          Length = 266

 Score =  103 bits (248), Expect = 1e-22
 Identities = 51/98 (52%), Positives = 65/98 (66%)
 Frame = +3

Query: 315 IPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRISFYMTNY 494
           IP+YRVMD  G+II  + +P +   T    Y  M  L+ MD+ILYESQRQGRISFYMTNY
Sbjct: 74  IPVYRVMDRQGKIIIDSHDPKVTYCT----YLKMTLLNTMDRILYESQRQGRISFYMTNY 129

Query: 495 GEEGIT*AAPRALSPKDLVFSQYREVGVFLYRGMTVTE 608
           GEE     +  AL  +DL+  QYRE GV ++RG T+ +
Sbjct: 130 GEEATHFGSAAALEMEDLIMGQYREAGVLMWRGFTLAD 167



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 24/32 (75%), Positives = 25/32 (78%)
 Frame = +1

Query: 613 VNQCYGNCEDPGKGRQMPVHYGSKHHNMVTIS 708
           +NQCY N  D GKGRQMPVHYGSK  N VTIS
Sbjct: 169 MNQCYANQHDAGKGRQMPVHYGSKELNFVTIS 200


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +1

Query: 64  YEQQYFRESVQS*TFVLDF*KQAIDVKSSDVRKRSITNIVKWLLSTRTRPETAQNGGGKI 243
           Y++ Y + S    T      K +ID KS DVR +S +  V+   ST    +    G  K+
Sbjct: 740 YDEDYSKSSKGKATAAKKDKKLSIDAKSKDVRSKSKSKSVEKRTSTEKSSKEPDPGVSKM 799

Query: 244 AEFPAQ 261
              P+Q
Sbjct: 800 MGPPSQ 805


>SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8)
          Length = 653

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -1

Query: 298 SLKNFISLTYGALAPEILLSYHRHSVPFRAS---YASTKAISRYLLSIFFSHH 149
           SL  + S+T   +   + + Y+ HSV FRAS   ++++  I+RY+    F HH
Sbjct: 576 SLGTYSSITI--ITAYVFMPYYNHSVRFRASLGTFSNSTTITRYV----FEHH 622


>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1257

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 124 KQAIDVKSSDVRKRSITNIVKWLLSTRTRPETAQNG--GGKIAEFPA 258
           K+ +D+    +RK+   N++  + +++T+P +   G   G IAEF A
Sbjct: 250 KRYVDLHEELLRKKFYDNVMNCIFTSKTQPSSLDPGILNGYIAEFVA 296


>SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 192 KPFHDICYRSFSHITTFDIDSLFSKIQYKS 103
           K F ++C   F  +TTFDI +L  +I+ KS
Sbjct: 39  KSFKELCDEYFRTLTTFDIRNLTIRIRKKS 68


>SB_7425| Best HMM Match : MAM (HMM E-Value=0.45)
          Length = 300

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 396 INMYKTMVQLSHMDKILYESQRQGRISFYM 485
           +N+YK  +  +H+D I +++  QGR S ++
Sbjct: 103 LNVYKAQISTAHIDMIWFKTGNQGRNSDFV 132


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 644 RGKGDRCRSITEASTTTWSQYPSPLGNTNCP 736
           RG     R    +S T+ S YPSP G+T  P
Sbjct: 402 RGSPPSSRHSHSSSPTSSSTYPSPFGSTESP 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,446,756
Number of Sequences: 59808
Number of extensions: 553263
Number of successful extensions: 1449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)