Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0336.Seq
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 28 1.2
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 28 1.2
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 28 1.6
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 27 2.1
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.8
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ... 27 2.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 3.7
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 4.9
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 6.5
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 6.5
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 6.5
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 25 8.6
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 627 RNTGSQVPSQSSLGIKTLLLLCIELKTKSFG 535
+NTG+ +P Q S ++ L LLC+ L TK G
Sbjct: 711 QNTGAAIPLQISTNLRLLPLLCLAL-TKHTG 740
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 28.3 bits (60), Expect = 1.2
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = -3
Query: 406 YMLISVALSKFGSSFLSMICPLLSITR*IGIGS*LVSLK--NFIS--LTYGALAPEILLS 239
Y L+ ++ S S+ LS C + + + +GS + LK NF+ +T+ EILLS
Sbjct: 1220 YRLLGISCSDMVSNILSNECLPIKESFIVLLGSCIKQLKTENFLEYKVTFAKWV-EILLS 1278
Query: 238 YHRHSVPFRASYASTKAISRY 176
Y PF + A+ +I +
Sbjct: 1279 YSNEYQPFSSRKAALDSIIHF 1299
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 439 LSIWLSCTMVLYMLISVALSKF-GSSFLSMI 350
LSIW S M+LY L+ V F GSS +S++
Sbjct: 237 LSIWQSLVMILYYLLYVLFVFFSGSSGVSVV 267
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 273 VSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSH 431
+SE+++ + +P Y + D DK+ PN+D + + T+V L +
Sbjct: 592 LSEIRYSLRELVQDLPSYSLFDTLWVFYDKHIYPNVDPDYISTLIDTLVSLEN 644
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 71 NNIFENQCNRKLLYWIFE-NRLSMS 142
NN F+N CNRK+ +I E RLS S
Sbjct: 85 NNTFQNPCNRKIEGYIKEIERLSNS 109
>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -1
Query: 639 PRSFRNTGSQVPSQSSLGIKTLLLLCIELKTKSFGESAEALPM*CPPR 496
P+SF + + SLG+ TL+LL I++K +S+ A + PPR
Sbjct: 142 PQSFYD---HIKENVSLGLHTLVLLDIKVKEQSWENLARGRKVYEPPR 186
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +3
Query: 159 KKIDNKYREMAFVDAYEARNGTEWR--W*DSRISGARAPYVSEMKFFNETSYEPIPIYRV 332
+K Y +A D Y + + + W ISG P S++K N + +P+ + V
Sbjct: 1381 RKHQGGYGVVAVSDKYSKQTLSRYPIFWSLVHISGLPNPDPSDLKLLNHLTDDPVDVDFV 1440
Query: 333 MDNNGQIIDK--NEEPNLD 383
++ +++ K E NLD
Sbjct: 1441 LEAKRKLLKKQTQEWANLD 1459
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 288 FFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQ 422
+F ++Y+ I +DNN ++D N PN + ++ + Y + Q
Sbjct: 268 YFPNSTYQNI--LNSLDNNPAVLDLNGPPNQESSSSASSYGSRTQ 310
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 650 FPRILAVSVTLVHKFRHSHPSV*KH 576
FP+ A+SV + HK RH H V KH
Sbjct: 874 FPKS-ALSVRVKHKRRHRHDRVMKH 897
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 41 DEHKVEFCMNNNIFENQCNRKLLYWIFENRLSMS 142
+EH+ ++ N++ + NRKLL + FE S+S
Sbjct: 47 EEHETTPIISQNLYLDTINRKLLDFDFEKVCSVS 80
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 672 NGPASVSLSPDPRSFRNTGS-QVPSQSSLGIKTLLLLCIELKTKSFGESAEAL 517
N P+ S +PD S NT S +VPS S + +L ++ K++ S++ L
Sbjct: 140 NNPSHTSRNPDSGSSLNTASHEVPSSKS-DVNVQMLARLKSKSRQKISSSDPL 191
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 8.6
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Frame = +3
Query: 309 EPIPIYRVMDN--NGQIID-KNEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRI-S 476
+P P+ ++ D+ G ID + E + K L+ +Y+ MV + ++ + +I
Sbjct: 48 KPFPV-KLDDSVFEGYKIDVPSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRG 106
Query: 477 FYMTNYGEEGIT*AAPRHSHRKIWSSV--QYREVGVFLYRGMTVTELVNQCYGNCEDPGK 650
F + G+E + AA + S+ YR G RG+++ ++ + G K
Sbjct: 107 FCHLSIGQEAV--AAGIEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASK 164
Query: 651 GRQMPVHYGSKH 686
G+ +H +K+
Sbjct: 165 GKGGSMHIFAKN 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,229
Number of Sequences: 5004
Number of extensions: 74187
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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