Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0336.Seq
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421...   136   2e-32
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488...    27   1.9  
08_02_1194 + 25147935-25149455                                         30   2.2  
10_08_0401 + 17629912-17630376                                         29   2.9  
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426...    29   5.1  
03_01_0203 - 1610124-1610154,1610244-1610419,1610490-1611124,161...    28   6.8  
03_02_0273 - 7036125-7037999                                           28   9.0  

>12_01_0535 +
           4208410-4208661,4209529-4209627,4210125-4210265,
           4210378-4210560,4210664-4210821,4210905-4211004,
           4211085-4211196,4211241-4211419,4211489-4211674,
           4211762-4211929
          Length = 525

 Score =  136 bits (328), Expect = 2e-32
 Identities = 67/150 (44%), Positives = 90/150 (60%)
 Frame = +3

Query: 255 GARAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHM 434
           G +  +V+EM F  E+  + I  YRV+D++G+ I  +    + K   + MY  M  L  M
Sbjct: 124 GGKVSFVAEMNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEMATLQVM 183

Query: 435 DKILYESQRQGRISFYMTNYGEEGIT*AAPRHSHRKIWSSVQYREVGVFLYRGMTVTELV 614
           D I +E+QRQGRISFY+T++GEE I  A+            QYRE GV L+RG T+ E  
Sbjct: 184 DTIFFEAQRQGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFA 243

Query: 615 NQCYGNCEDPGKGRQMPVHYGSKHHNMVTI 704
           NQC+GN  D GKGRQMP+HYGS   N  T+
Sbjct: 244 NQCFGNKLDYGKGRQMPIHYGSNRLNYFTV 273


>03_05_0890 -
           28547462-28547545,28548451-28548528,28548641-28548814,
           28548902-28548958,28549065-28549116,28549907-28549995,
           28550259-28550344,28550427-28550637,28551790-28551882,
           28551958-28552098,28552175-28552267,28553879-28554113,
           28554263-28554435,28555234-28556571,28556668-28556853,
           28557625-28557713,28557756-28557905,28557951-28558596
          Length = 1324

 Score = 26.6 bits (56), Expect(2) = 1.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 617 PVLRKLRGSGERETDAGPLRKQAPQHGHNYLVPLGNTN 730
           P+L    G    +T +GPL    PQ GH     LG++N
Sbjct: 120 PILASSLGLNRIKTRSGPL----PQEGHRIAAALGSSN 153



 Score = 21.8 bits (44), Expect(2) = 1.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 488 QLRRGGHHIGSASALSP 538
           QLR GG    SA+ALSP
Sbjct: 104 QLRDGGAGGASAAALSP 120


>08_02_1194 + 25147935-25149455
          Length = 506

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 619 SVTETARIRGKGDRCRSITEASTTTWSQLSSSIREHKLAP 738
           +V +T+R+RG  DR      +S T W  L   +  H  +P
Sbjct: 103 AVPDTSRVRGFADRSMIWLPSSDTRWKTLRGVVATHVFSP 142


>10_08_0401 + 17629912-17630376
          Length = 154

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 497 RGGHHIGSASALSPKDLVFSSIQRSRSVFIPRDDCDGTCEPVLRKLRGSGERETDAG 667
           R GH  G+A ALSP+      ++ S +     D  +G   P  +  RG     T AG
Sbjct: 53  RRGHAAGAAPALSPRAAPRGQLRESAASVARADQEEGGVAPARKVGRGCARAGTVAG 109


>01_06_0319 -
           28441082-28441102,28441630-28441701,28442568-28442627,
           28442918-28443105,28444300-28444327,28444880-28444907,
           28444942-28445163,28445238-28445409,28446224-28447468,
           28447573-28447741,28447820-28448045,28449096-28449451,
           28449530-28449724,28450655-28450864,28451729-28452004
          Length = 1155

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = -3

Query: 322 IGIGS*LVSLKNFISLTYGALAPEILLSYHRHSVPFRASYASTKAISRYLLSIFFSH 152
           + I S L S K+F SL+Y + AP +  S    S    AS + +  ISR + +IF  H
Sbjct: 600 LAISSSLASAKSFRSLSYNSSAPSLYSSL--FSWETDASLSCSDGISRPIDTIFKFH 654


>03_01_0203 -
           1610124-1610154,1610244-1610419,1610490-1611124,
           1611201-1611408
          Length = 349

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 717 NGTR*L*PC-CGACFRNGPASVSLSPDP---RSFRNTGSQVP 604
           +G R L P  CGAC+R+ P S ++ P P   R F  + S +P
Sbjct: 7   SGQRLLLPIPCGACYRS-PPSPAIKPSPLGLRPFTKSSSSLP 47


>03_02_0273 - 7036125-7037999
          Length = 624

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -3

Query: 286 FISLTYGALAPEILLSYHRHSVPFRASYASTKAISRYLLSIFFSHHYF*HR*PVFKNPIQ 107
           F  LTYGA+A +     HRH +    S A +      L +   ++  +  + PV K+   
Sbjct: 226 FPPLTYGAIAADPGAGKHRHGIIVATSIAGSFVACAVLCTAILAYRRYRKKAPVPKHVSP 285

Query: 106 KFT 98
           K +
Sbjct: 286 KLS 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,396,640
Number of Sequences: 37544
Number of extensions: 466912
Number of successful extensions: 1171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)