Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0336.Seq
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical ...   163   1e-40
AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical ...   163   1e-40
Z99271-4|CAB16474.1|  105|Caenorhabditis elegans Hypothetical pr...    67   1e-11
M23366-1|AAA28114.1|  170|Caenorhabditis elegans myosin light ch...    30   1.5  
M23365-1|AAA28113.1|  170|Caenorhabditis elegans myosin light ch...    30   1.5  
AC024089-6|AAK09070.2|  170|Caenorhabditis elegans Myosin light ...    30   1.5  
AC024089-5|AAK09069.1|  170|Caenorhabditis elegans Myosin light ...    30   1.5  
L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    29   2.6  
L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U28928-3|AAA68336.1|  236|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    28   8.0  

>AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3b protein.
          Length = 432

 Score =  163 bits (396), Expect = 1e-40
 Identities = 77/150 (51%), Positives = 104/150 (69%), Gaps = 2/150 (1%)
 Frame = +3

Query: 261 RAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDK 440
           +A +  +++  N      +PIYRV +  G +IDK+++PN D+ T + MYKTM QL+ MD+
Sbjct: 42  KAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDR 101

Query: 441 ILYESQRQGRISFYMTNYGEEG--IT*AAPRHSHRKIWSSVQYREVGVFLYRGMTVTELV 614
           ILY+SQRQGRISFYMT++GEEG  +  AA       I+   QYRE GV L+RG T+   +
Sbjct: 102 ILYDSQRQGRISFYMTSFGEEGNHVGSAAALEPQDLIYG--QYREAGVLLWRGYTMENFM 159

Query: 615 NQCYGNCEDPGKGRQMPVHYGSKHHNMVTI 704
           NQCYGN +D GKGRQMP+H+G+K  N VTI
Sbjct: 160 NQCYGNADDLGKGRQMPMHFGTKERNFVTI 189


>AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3a protein.
          Length = 431

 Score =  163 bits (396), Expect = 1e-40
 Identities = 77/150 (51%), Positives = 104/150 (69%), Gaps = 2/150 (1%)
 Frame = +3

Query: 261 RAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDK 440
           +A +  +++  N      +PIYRV +  G +IDK+++PN D+ T + MYKTM QL+ MD+
Sbjct: 41  KAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDR 100

Query: 441 ILYESQRQGRISFYMTNYGEEG--IT*AAPRHSHRKIWSSVQYREVGVFLYRGMTVTELV 614
           ILY+SQRQGRISFYMT++GEEG  +  AA       I+   QYRE GV L+RG T+   +
Sbjct: 101 ILYDSQRQGRISFYMTSFGEEGNHVGSAAALEPQDLIYG--QYREAGVLLWRGYTMENFM 158

Query: 615 NQCYGNCEDPGKGRQMPVHYGSKHHNMVTI 704
           NQCYGN +D GKGRQMP+H+G+K  N VTI
Sbjct: 159 NQCYGNADDLGKGRQMPMHFGTKERNFVTI 188


>Z99271-4|CAB16474.1|  105|Caenorhabditis elegans Hypothetical
           protein Y43F4A.4 protein.
          Length = 105

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
 Frame = +3

Query: 243 SRISGAR-APYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMV 419
           S+  G R A +  +++  N      +PIYRV +  G +IDK+++PN D+ +L+ MYKTM 
Sbjct: 34  SKYLGHRIAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQSLLKMYKTMT 93

Query: 420 QLSHMDKILYES 455
           QL+ MD+ILY+S
Sbjct: 94  QLNIMDRILYDS 105


>M23366-1|AAA28114.1|  170|Caenorhabditis elegans myosin light chain
           2 protein.
          Length = 170

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
 Frame = +3

Query: 351 IIDKNEEPNLDKATLINMYKTMVQL---SHMDKILYESQRQGRISFYMTNYGE 500
           I+D+N++  +DK+ L ++Y +M Q+   S +D ++ E+      + ++T +GE
Sbjct: 35  IMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKEASGPINFTVFLTLFGE 87


>M23365-1|AAA28113.1|  170|Caenorhabditis elegans myosin light chain
           1 protein.
          Length = 170

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
 Frame = +3

Query: 351 IIDKNEEPNLDKATLINMYKTMVQL---SHMDKILYESQRQGRISFYMTNYGE 500
           I+D+N++  +DK+ L ++Y +M Q+   S +D ++ E+      + ++T +GE
Sbjct: 35  IMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKEASGPINFTVFLTLFGE 87


>AC024089-6|AAK09070.2|  170|Caenorhabditis elegans Myosin light
           chain protein 1 protein.
          Length = 170

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
 Frame = +3

Query: 351 IIDKNEEPNLDKATLINMYKTMVQL---SHMDKILYESQRQGRISFYMTNYGE 500
           I+D+N++  +DK+ L ++Y +M Q+   S +D ++ E+      + ++T +GE
Sbjct: 35  IMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKEASGPINFTVFLTLFGE 87


>AC024089-5|AAK09069.1|  170|Caenorhabditis elegans Myosin light
           chain protein 2 protein.
          Length = 170

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
 Frame = +3

Query: 351 IIDKNEEPNLDKATLINMYKTMVQL---SHMDKILYESQRQGRISFYMTNYGE 500
           I+D+N++  +DK+ L ++Y +M Q+   S +D ++ E+      + ++T +GE
Sbjct: 35  IMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKEASGPINFTVFLTLFGE 87


>L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical
           protein C02F5.7b protein.
          Length = 466

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = -2

Query: 722 SLMELDNCDHVVVLASVMDRHLSPFPRI-----LAVSVTLVHKFRHSHPSV*KHSYFSVL 558
           +++ELDNC  +        RH     RI       VS   + +F+H  P++  H+YF+ +
Sbjct: 387 NVLELDNCPQLTDSTLSHLRHCKALKRIDLYDCQNVSKEAIVRFQHHRPNIEIHAYFAPV 446

Query: 557 N*RPNLSVRVPRRCLCDALL 498
               +  V     C C  +L
Sbjct: 447 TPPTDQVVNRGGICRCCVIL 466


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -2

Query: 185 FTIFVIDLFLTSLLLTS 135
           FT+FVIDLFLTSL +++
Sbjct: 227 FTVFVIDLFLTSLTVSN 243


>L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical
           protein C02F5.7a protein.
          Length = 461

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -2

Query: 722 SLMELDNCDHVVVLASVMDRHLSPFPRI-----LAVSVTLVHKFRHSHPSV*KHSYFS 564
           +++ELDNC  +        RH     RI       VS   + +F+H  P++  H+YF+
Sbjct: 387 NVLELDNCPQLTDSTLSHLRHCKALKRIDLYDCQNVSKEAIVRFQHHRPNIEIHAYFA 444


>U28928-3|AAA68336.1|  236|Caenorhabditis elegans Hypothetical
           protein C44B7.5 protein.
          Length = 236

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 167 DLFLTSLLLTSIACFQKSNTKVYDCTDSRKYC 72
           ++ L   L++S+     S T + DC D  KYC
Sbjct: 7   NMILKLALISSLLALAASRTHLTDCLDDHKYC 38


>U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical
           protein F33G12.4 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 475 EMRPCLCDSYRILSIWLSCTMVLYMLISVALSKFGSSFLSMICPLLSI 332
           EMR C   S  ++ +   CTM   +  S++L  FG + LS+  P+  +
Sbjct: 202 EMRSC---SLELIPVPAMCTMFRELPTSISLLDFGDNHLSIFPPIFHL 246


>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 289 SSTKLVMSQFRFIELWIITDRSSTKMKNRTWIRLR*LTCTKPWYN*AIWIKFYMN 453
           +S  LV  +F F  +W +  R        +W+  R L+C  P Y    ++   +N
Sbjct: 566 ASMLLVSLEFYFKGIWTLNLRELRNSIRLSWVSSRHLSCVVPAYKARFFVILLLN 620


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,679,127
Number of Sequences: 27780
Number of extensions: 423558
Number of successful extensions: 1265
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)