Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0336.Seq
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    27   0.24 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.0  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   5.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   5.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   7.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.2  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 475 EMRPCLCDSYRILSIWLSCTMVLYMLISVALSKF 374
           E+ P LCDS+  L I L CT  +  L ++++ ++
Sbjct: 105 ELGPMLCDSWVSLDI-LLCTASILSLCAISIDRY 137


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 675 RNGPASVSLSPDPR 634
           R+GP SVSLS  PR
Sbjct: 127 RDGPPSVSLSSPPR 140


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 619 WFTSSVTVIPRYKNTPTSL 563
           W   +   +PRYK  P+SL
Sbjct: 76  WRGMTFVTVPRYKGVPSSL 94


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 422 LYHGFVHVNQRSL 384
           +YHG V+V+QRSL
Sbjct: 88  IYHGEVNVHQRSL 100


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = -2

Query: 119 KSNTKVY-----DCTDSRKYCCSYKIQL 51
           KS++ VY     +CT + KYC S K+ L
Sbjct: 37  KSHSNVYQYRCANCTYATKYCHSLKLHL 64


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 633 SFRNTGSQVPSQSSLGIKTLLLLCIE 556
           SF    S VP++ SLG+ TLL +  +
Sbjct: 262 SFWLDQSAVPARVSLGVTTLLTMATQ 287



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 670 WTGICLPF 647
           WTG+CL F
Sbjct: 307 WTGVCLTF 314


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 633 SFRNTGSQVPSQSSLGIKTLLLLCIE 556
           SF    S VP++ SLG+ TLL +  +
Sbjct: 262 SFWLDQSAVPARVSLGVTTLLTMATQ 287



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 670 WTGICLPF 647
           WTG+CL F
Sbjct: 307 WTGVCLTF 314


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 44  EHKVEFCMNNNIFENQCNRKLLY 112
           EHK+   ++NN   N  N K LY
Sbjct: 78  EHKIISSLSNNYNYNNNNYKKLY 100


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 44  EHKVEFCMNNNIFENQCNRKLLY 112
           EHK+   ++NN   N  N K LY
Sbjct: 78  EHKIISSLSNNYNYNNNNYKKLY 100


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 44  EHKVEFCMNNNIFENQCNRKLLY 112
           EHK+   ++NN   N  N K LY
Sbjct: 78  EHKIISSLSNNYNYNNNNYKKLY 100


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 552 KTKSFGESAEALPM*CPPRRSWSYKMK 472
           +  +FG S EALP     R+   +K K
Sbjct: 50  RPSTFGSSNEALPQPISKRKDKEHKKK 76


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 552 KTKSFGESAEALPM*CPPRRSWSYKMK 472
           +  +FG S EALP     R+   +K K
Sbjct: 50  RPSTFGSSNEALPQPISKRKDKEHKKK 76


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -3

Query: 655 LPFPGSSQFP*HWFTSSVTVIPRYKNTPTS 566
           +P P  +    HW  S V   P  + TP S
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQTPPS 402


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 131  ACFQKSNTKVYDC 93
            ACF     ++YDC
Sbjct: 1056 ACFDSDRERLYDC 1068


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 68  NNNIFENQCNRKLLY 112
           NNN + N  N+KL Y
Sbjct: 314 NNNNYNNYNNKKLYY 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,404
Number of Sequences: 438
Number of extensions: 5420
Number of successful extensions: 28
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)