Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0332.Seq
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   7e-21
SB_42971| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.010
SB_14302| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.010
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  27   8.2  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   8.2  

>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 43/59 (72%), Positives = 48/59 (81%)
 Frame = +1

Query: 76  EENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVT 252
           EE  F+VD+VS IIKE IE +IGG AYQHN VNQWTS VVE CL QLTKL KP+KY+VT
Sbjct: 8   EETSFVVDEVSNIIKEGIEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVT 66



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = +3

Query: 258 ILQKXGAGLHTSSSCYWXNTTDGSCTXRWXNKTM 359
           I+QK GAGLHTSSSCYW NTTDGSCT +  +K++
Sbjct: 69  IMQKNGAGLHTSSSCYWDNTTDGSCTIKQPDKSL 102


>SB_42971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +3

Query: 129 RKFNWRHCLSTQQCQPMDFSSC*VMSGAVD*VTKTIQI 242
           R++ W+ C+STQQ QPMD      MS   D   KT+Q+
Sbjct: 133 RRYRWK-CVSTQQSQPMDLKCRRAMSKPTDQAGKTVQV 169


>SB_14302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 279 GLHTSSSCYWXNTTDGSCTXRWXNKTMYCIVSV 377
           GLH SS C W   TDGS T  + N +++ + +V
Sbjct: 87  GLHISSRCLWYPNTDGSATAVYRNTSLFAVATV 119


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -2

Query: 296 RTCMQXCTXLLQYCQVTTYLYGFCNLVNCPRHDSTTAEVHW 174
           RT       L  YC+ +   +  CN   CPR D   A   W
Sbjct: 168 RTRSHLMNVLAPYCKESLVQFDLCNDTCCPRDDDVKAFNPW 208


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 40  KIMEVKECNDLDEENQFIVD--DVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQ 213
           +I E +EC DLD   Q++ D   V K + E  E    G   +  ++ +W        +  
Sbjct: 665 RIEEFRECGDLDMMVQYVKDVGSVQKKLGECTETI--GYINEEEDLFKWERTEYPE-VES 721

Query: 214 LTKLQKPYKYVVT 252
           +TK  +PY+ + T
Sbjct: 722 ITKAIEPYQKLFT 734


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 139  IGGTAYQHNNVNQWTSAVVESCLGQLTKL 225
            +GG A +HNN NQW    ++  LG++TK+
Sbjct: 6396 MGGWAVRHNNHNQW----LQVDLGRVTKV 6420


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,283,500
Number of Sequences: 59808
Number of extensions: 218730
Number of successful extensions: 446
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)